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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.228 C 0.272 G 0.272 T 0.228 

MOTIF 1-TRTCGYGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 118 P= 1.3e-002
 0.000371 0.035680 0.000442 0.963508
 0.544415 0.000442 0.454773 0.000371
 0.000371 0.000442 0.000442 0.998746
 0.000371 0.998817 0.000442 0.000371
 0.250240 0.114240 0.635150 0.000371
 0.000371 0.602480 0.011757 0.385393
 0.045521 0.000442 0.942406 0.011631
 0.829182 0.000442 0.158745 0.011631

MOTIF 2-GMCTCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.000988 0.001176 0.996849 0.000988
 0.258188 0.494532 0.246292 0.000988
 0.000988 0.826411 0.031173 0.141429
 0.000988 0.001176 0.001176 0.996660
 0.030984 0.966852 0.001176 0.000988
 0.555992 0.258035 0.061217 0.124756
 0.000988 0.001176 0.996849 0.000988
 0.000988 0.996849 0.001176 0.000988

MOTIF 3-CCCAGGCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.004496 0.910267 0.069132 0.016106
 0.001186 0.996214 0.001413 0.001186
 0.056867 0.868339 0.001413 0.073381
 0.865528 0.001413 0.023230 0.109828
 0.061803 0.001413 0.920679 0.016106
 0.016106 0.016332 0.894181 0.073381
 0.037226 0.909216 0.037452 0.016106
 0.146042 0.117225 0.012120 0.724613

MOTIF 4-TGGTGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.001875 0.002234 0.002234 0.993657
 0.001875 0.002234 0.879906 0.115985
 0.025456 0.059197 0.799362 0.115985
 0.001875 0.059197 0.059197 0.879731
 0.058839 0.025815 0.913472 0.001875
 0.970076 0.002234 0.002234 0.025456
 0.936694 0.002234 0.002234 0.058839
 0.913113 0.002234 0.025815 0.058839

MOTIF 5-MGATAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.597925 0.398007 0.002211 0.001856
 0.001856 0.002211 0.994076 0.001856
 0.850568 0.002211 0.002211 0.145010
 0.001856 0.002211 0.002211 0.993722
 0.993722 0.002211 0.002211 0.001856
 0.937335 0.058597 0.002211 0.001856
 0.001856 0.002211 0.681764 0.314169
 0.001856 0.002211 0.824918 0.171015

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ZBED1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ZBED1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	3.70 seconds
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