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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.187 C 0.313 G 0.313 T 0.187 

MOTIF 1-GCCGCCAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 230 P= 4.8e-006
 0.017699 0.003057 0.915179 0.064065
 0.041529 0.859854 0.065181 0.033437
 0.213763 0.651619 0.109140 0.025478
 0.002934 0.034593 0.962289 0.000184
 0.000184 0.999325 0.000307 0.000184
 0.000184 0.999325 0.000307 0.000184
 0.997898 0.000307 0.001611 0.000184
 0.000184 0.000307 0.000307 0.999201

MOTIF 2-CCCGMCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 2.4e-001
 0.001864 0.993156 0.003115 0.001864
 0.001864 0.993156 0.003115 0.001864
 0.001864 0.993156 0.003115 0.001864
 0.001864 0.003115 0.993156 0.001864
 0.349263 0.608562 0.003115 0.039060
 0.209966 0.785054 0.003115 0.001864
 0.001864 0.993156 0.003115 0.001864
 0.001864 0.993156 0.003115 0.001864

MOTIF 3-CAGCCACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.0e-001
 0.058533 0.904745 0.035797 0.000925
 0.961733 0.001546 0.035797 0.000925
 0.015104 0.001546 0.968247 0.015104
 0.069537 0.844905 0.084633 0.000925
 0.018051 0.931049 0.015724 0.035176
 0.856109 0.139887 0.003079 0.000925
 0.000925 0.996604 0.001546 0.000925
 0.754619 0.059154 0.070158 0.116069

MOTIF 4-CCTCCTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 6.5e-001
 0.118618 0.843865 0.014103 0.023414
 0.061821 0.653484 0.099286 0.185409
 0.052810 0.031358 0.092988 0.822844
 0.064828 0.861298 0.047671 0.026204
 0.123426 0.669999 0.190803 0.015772
 0.010636 0.031149 0.007039 0.951175
 0.037477 0.857982 0.049481 0.055060
 0.818292 0.064270 0.111101 0.006336

MOTIF 5-CAGTCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001617 0.713311 0.283454 0.001617
 0.662841 0.087374 0.248168 0.001617
 0.001617 0.002702 0.994063 0.001617
 0.001617 0.002702 0.002702 0.992978
 0.001617 0.994063 0.002702 0.001617
 0.121575 0.644494 0.232314 0.001617
 0.001617 0.994063 0.002702 0.001617
 0.001617 0.002702 0.994063 0.001617

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/YY1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_YY1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	2.92 seconds
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