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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-CTGTAATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.1e-002
 0.000840 0.997652 0.000667 0.000840
 0.000840 0.000667 0.021568 0.976924
 0.000840 0.000667 0.997652 0.000840
 0.000840 0.149377 0.000667 0.849116
 0.997825 0.000667 0.000667 0.000840
 0.849605 0.000667 0.148888 0.000840
 0.000840 0.170278 0.000667 0.828215
 0.000840 0.997652 0.000667 0.000840

MOTIF 2-AGGCTGGW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 9.5e-002
 0.973007 0.025230 0.000781 0.000983
 0.000983 0.000781 0.987132 0.011104
 0.049960 0.000781 0.948276 0.000983
 0.000983 0.987132 0.000781 0.011104
 0.000983 0.000781 0.049758 0.948479
 0.049960 0.000781 0.948276 0.000983
 0.000983 0.099371 0.874214 0.025432
 0.544889 0.000781 0.000781 0.453550

MOTIF 3-ATCACKTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.7e-001
 0.971942 0.000811 0.000811 0.026436
 0.001022 0.051721 0.026225 0.921032
 0.001022 0.997145 0.000811 0.001022
 0.738618 0.000811 0.259549 0.001022
 0.011542 0.935797 0.026225 0.026436
 0.011542 0.206442 0.316625 0.465390
 0.102923 0.000811 0.000811 0.895454
 0.026436 0.077135 0.869994 0.026436

MOTIF 4-CAGCCTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 1.7e-001
 0.001223 0.996584 0.000971 0.001223
 0.812348 0.062786 0.123643 0.001223
 0.001223 0.000971 0.996584 0.001223
 0.001223 0.996584 0.000971 0.001223
 0.013811 0.892672 0.031379 0.062138
 0.001223 0.000971 0.000971 0.996836
 0.031631 0.966175 0.000971 0.001223
 0.001223 0.996584 0.000971 0.001223

MOTIF 5-CTACTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.025336 0.929209 0.020118 0.025336
 0.025336 0.020118 0.020118 0.934427
 0.934427 0.020118 0.020118 0.025336
 0.025336 0.929209 0.020118 0.025336
 0.025336 0.020118 0.020118 0.934427
 0.934427 0.020118 0.020118 0.025336
 0.934427 0.020118 0.020118 0.025336
 0.934427 0.020118 0.020118 0.025336

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/YBX3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_YBX3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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