********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.196 C 0.304 G 0.304 T 0.196 

MOTIF 1-AGRGGGCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 157 P= 2.9e-004
 0.958157 0.041138 0.000428 0.000277
 0.000277 0.019994 0.979452 0.000277
 0.494840 0.000428 0.504456 0.000277
 0.000277 0.010195 0.818714 0.170814
 0.000277 0.000428 0.999019 0.000277
 0.000277 0.000428 0.999019 0.000277
 0.000277 0.999019 0.000428 0.000277
 0.284445 0.000428 0.714850 0.000277

MOTIF 2-GTGGCCAY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 5.0e-001
 0.000580 0.000896 0.997945 0.000580
 0.000580 0.000896 0.000896 0.997629
 0.225626 0.025261 0.633760 0.115354
 0.000580 0.161038 0.837803 0.000580
 0.000580 0.727221 0.000896 0.271304
 0.000580 0.846243 0.152598 0.000580
 0.681592 0.000896 0.138537 0.178975
 0.000580 0.653586 0.000896 0.344938

MOTIF 3-ACCCACAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.930722 0.066498 0.001688 0.001092
 0.039625 0.880467 0.078816 0.001092
 0.039625 0.880529 0.078754 0.001092
 0.078158 0.841996 0.078754 0.001092
 0.879933 0.001688 0.117287 0.001092
 0.039625 0.764557 0.156193 0.039625
 0.737932 0.066498 0.117287 0.078282
 0.001092 0.040221 0.095162 0.863525

MOTIF 4-CGGCTGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.001361 0.995173 0.002105 0.001361
 0.001361 0.002105 0.995173 0.001361
 0.021252 0.002105 0.975282 0.001361
 0.049410 0.782622 0.146716 0.021252
 0.001361 0.026129 0.002105 0.970405
 0.001361 0.236620 0.740767 0.021252
 0.049410 0.947124 0.002105 0.001361
 0.049488 0.754152 0.050153 0.146207

MOTIF 5-AGAACTGR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.989065 0.004131 0.004131 0.002672
 0.002672 0.004131 0.990524 0.002672
 0.894748 0.004131 0.004131 0.096990
 0.989065 0.004131 0.004131 0.002672
 0.002672 0.990524 0.004131 0.002672
 0.002672 0.098449 0.098449 0.800430
 0.002672 0.004131 0.990524 0.002672
 0.477315 0.004131 0.515882 0.002672

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/XRCC5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_XRCC5/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n11.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.41 seconds
********************************************************************************