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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.32 C 0.18 G 0.18 T 0.32 

MOTIF 1-CATTTTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.5e-002
 0.001837 0.995297 0.001030 0.001837
 0.797260 0.001030 0.199873 0.001837
 0.113623 0.001030 0.001030 0.884317
 0.120679 0.120387 0.001030 0.757904
 0.001837 0.001030 0.160387 0.836746
 0.001837 0.001030 0.262030 0.735103
 0.001837 0.001030 0.001030 0.996103
 0.996103 0.001030 0.001030 0.001837

MOTIF 2-TGTGGGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.7e-001
 0.066964 0.000847 0.014373 0.917816
 0.066964 0.000847 0.930679 0.001510
 0.004510 0.000847 0.066513 0.928130
 0.056467 0.000847 0.927650 0.015036
 0.001510 0.000847 0.996133 0.001510
 0.001510 0.132179 0.809845 0.056467
 0.876385 0.055804 0.000847 0.066964
 0.865888 0.066301 0.066301 0.001510

MOTIF 3-RYTGCARY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.342956 0.020483 0.509675 0.126887
 0.001800 0.607165 0.020483 0.370553
 0.001800 0.001010 0.267437 0.729754
 0.001800 0.001010 0.995391 0.001800
 0.001800 0.995391 0.001010 0.001800
 0.729754 0.267437 0.001010 0.001800
 0.370553 0.020483 0.607165 0.001800
 0.126887 0.509675 0.020483 0.342956

MOTIF 4-TCTCTCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.003161 0.001774 0.001774 0.993291
 0.003161 0.991904 0.001774 0.003161
 0.003161 0.001774 0.001774 0.993291
 0.003161 0.991904 0.001774 0.003161
 0.209734 0.001774 0.138823 0.649669
 0.003161 0.991904 0.001774 0.003161
 0.003161 0.923489 0.070188 0.003161
 0.993291 0.001774 0.001774 0.003161

MOTIF 5-CTAGCTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.003257 0.991658 0.001827 0.003257
 0.144465 0.001827 0.001827 0.851880
 0.922597 0.072318 0.001827 0.003257
 0.003257 0.001827 0.991658 0.003257
 0.003257 0.921167 0.001827 0.073748
 0.003257 0.001827 0.001827 0.993088
 0.003257 0.779960 0.072318 0.144465
 0.851880 0.001827 0.001827 0.144465

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/XRCC3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_XRCC3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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