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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.231 C 0.27 G 0.27 T 0.231 

MOTIF 1-CAYGTGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 236 P= 3.6e-009
 0.000199 0.999369 0.000233 0.000199
 0.999335 0.000233 0.000233 0.000199
 0.001344 0.625608 0.003039 0.370008
 0.093900 0.067748 0.838154 0.000199
 0.000199 0.000233 0.000233 0.999335
 0.000199 0.006946 0.992656 0.000199
 0.944516 0.039924 0.011850 0.003709
 0.000199 0.903992 0.004992 0.090817

MOTIF 2-GCCAATSA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 135 P= 1.8e-003
 0.069827 0.003162 0.903444 0.023567
 0.006145 0.979124 0.000534 0.014197
 0.007327 0.991682 0.000534 0.000457
 0.961625 0.000534 0.014274 0.023567
 0.998475 0.000534 0.000534 0.000457
 0.009617 0.014274 0.083778 0.892331
 0.055683 0.430313 0.508501 0.005502
 0.914326 0.000534 0.077813 0.007327

MOTIF 3-CCCACCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 3.1e-002
 0.000607 0.785207 0.000710 0.213476
 0.029088 0.835199 0.037209 0.098504
 0.006524 0.992159 0.000710 0.000607
 0.637861 0.000710 0.165844 0.195585
 0.000607 0.736872 0.000710 0.261812
 0.000607 0.873226 0.000710 0.125457
 0.000607 0.890126 0.000710 0.108557
 0.000607 0.882332 0.018959 0.098102

MOTIF 4-ACTTCTGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.2e-001
 0.858356 0.008749 0.017215 0.115679
 0.039280 0.881701 0.001478 0.077541
 0.039280 0.017215 0.001478 0.942027
 0.001264 0.001478 0.077632 0.919626
 0.001264 0.689895 0.077632 0.231209
 0.001264 0.001478 0.001478 0.995780
 0.017001 0.021961 0.959773 0.001264
 0.093484 0.789359 0.001478 0.115679

MOTIF 5-GCAAGGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.8e-001
 0.001811 0.002118 0.994260 0.001811
 0.001811 0.939796 0.002118 0.056275
 0.884675 0.002118 0.002118 0.111090
 0.993954 0.002118 0.002118 0.001811
 0.275895 0.002118 0.720177 0.001811
 0.001811 0.002118 0.994260 0.001811
 0.001811 0.134238 0.862140 0.001811
 0.884851 0.002118 0.002118 0.110914

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/USF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_USF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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