********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.35 C 0.15 G 0.15 T 0.35 

MOTIF 1-GAGAGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.7e-001
 0.002577 0.001105 0.942700 0.053618
 0.944171 0.001105 0.001105 0.053618
 0.046779 0.001105 0.898497 0.053618
 0.565294 0.073132 0.103790 0.257784
 0.106596 0.001105 0.715613 0.176686
 0.944171 0.052147 0.001105 0.002577
 0.002577 0.001105 0.942700 0.053618
 0.739404 0.154831 0.052147 0.053618

MOTIF 2-GGAAGGAW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.004558 0.001955 0.988929 0.004558
 0.186210 0.129372 0.679860 0.004558
 0.773820 0.001955 0.001955 0.222269
 0.901237 0.001955 0.001955 0.094852
 0.004558 0.001955 0.988929 0.004558
 0.004558 0.001955 0.988929 0.004558
 0.901237 0.001955 0.001955 0.094852
 0.374457 0.092249 0.001955 0.531338

MOTIF 3-ATHGCAYC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.994212 0.001336 0.001336 0.003115
 0.064831 0.063052 0.001336 0.870781
 0.376332 0.309913 0.124767 0.188988
 0.188261 0.001336 0.807287 0.003115
 0.064831 0.930718 0.001336 0.003115
 0.809066 0.124767 0.063052 0.003115
 0.064831 0.619943 0.001336 0.313890
 0.003115 0.744118 0.001336 0.251430

MOTIF 4-AATACTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.995251 0.001096 0.001096 0.002556
 0.841553 0.001096 0.001096 0.156254
 0.258113 0.001096 0.051728 0.689062
 0.840629 0.001096 0.001096 0.157179
 0.095788 0.887039 0.001096 0.016077
 0.088244 0.001096 0.001096 0.909563
 0.893988 0.001096 0.051728 0.053187
 0.842760 0.001096 0.102956 0.053187

MOTIF 5-ATATTGGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.811461 0.001939 0.001939 0.184661
 0.004520 0.001939 0.001939 0.991602
 0.902059 0.001939 0.091482 0.004520
 0.004520 0.001939 0.001939 0.991602
 0.004520 0.001939 0.001939 0.991602
 0.094063 0.091482 0.809935 0.004520
 0.094063 0.001939 0.899478 0.004520
 0.094063 0.091482 0.091482 0.722973

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/U2AF2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_U2AF2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n05.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.08 seconds
********************************************************************************