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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-TAATCCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.1e-002
 0.001769 0.001578 0.001578 0.995076
 0.995076 0.001578 0.001578 0.001769
 0.902144 0.001578 0.094510 0.001769
 0.001769 0.001578 0.001578 0.995076
 0.001769 0.994885 0.001578 0.001769
 0.001769 0.994885 0.001578 0.001769
 0.001769 0.855262 0.001578 0.141392
 0.995076 0.001578 0.001578 0.001769

MOTIF 2-CAAAGTGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.2e-001
 0.002668 0.992285 0.002379 0.002668
 0.992573 0.002379 0.002379 0.002668
 0.992573 0.002379 0.002379 0.002668
 0.992573 0.002379 0.002379 0.002668
 0.002668 0.072350 0.922314 0.002668
 0.002668 0.002379 0.072350 0.922602
 0.002668 0.072350 0.852343 0.072639
 0.002668 0.992285 0.002379 0.002668

MOTIF 3-GYGGATCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 2.4e-001
 0.003114 0.002777 0.990995 0.003114
 0.003114 0.413753 0.002777 0.580356
 0.003114 0.002777 0.990995 0.003114
 0.003114 0.002777 0.990995 0.003114
 0.991332 0.002777 0.002777 0.003114
 0.003114 0.002777 0.002777 0.991332
 0.003114 0.990995 0.002777 0.003114
 0.991332 0.002777 0.002777 0.003114

MOTIF 4-CATGTTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.001705 0.816072 0.001520 0.180702
 0.861114 0.001520 0.090947 0.046418
 0.091132 0.001520 0.001520 0.905827
 0.091132 0.001520 0.905643 0.001705
 0.001705 0.001520 0.001520 0.995254
 0.001705 0.001520 0.001520 0.995254
 0.091132 0.001520 0.905643 0.001705
 0.001705 0.001520 0.995070 0.001705

MOTIF 5-CTCTACTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.001937 0.973370 0.022756 0.001937
 0.001937 0.052526 0.052526 0.893011
 0.103698 0.892638 0.001727 0.001937
 0.154497 0.001727 0.103488 0.740288
 0.943810 0.001727 0.052526 0.001937
 0.001937 0.892638 0.001727 0.103698
 0.001937 0.001727 0.001727 0.994608
 0.892847 0.103488 0.001727 0.001937

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TSC22D4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TSC22D4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.38 seconds
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