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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-CATGTGAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 9.5e-002
 0.023654 0.974704 0.000749 0.000893
 0.906492 0.000749 0.046271 0.046488
 0.069250 0.069179 0.039032 0.822540
 0.046488 0.039032 0.868065 0.046415
 0.055838 0.069032 0.023510 0.851621
 0.023654 0.032969 0.942484 0.000893
 0.786677 0.042159 0.101656 0.069507
 0.023654 0.281167 0.010171 0.685008

MOTIF 2-AGCCAATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 2.1e-001
 0.864689 0.063780 0.070302 0.001229
 0.233818 0.063780 0.511083 0.191320
 0.001229 0.933863 0.032355 0.032553
 0.001229 0.965187 0.001030 0.032553
 0.965386 0.001030 0.001030 0.032553
 0.996710 0.001030 0.001030 0.001229
 0.001229 0.001030 0.001030 0.996710
 0.032553 0.965187 0.001030 0.001229

MOTIF 3-CCGGAAGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 5.0e-001
 0.067891 0.840941 0.056921 0.034247
 0.200716 0.764539 0.017319 0.017426
 0.084931 0.067622 0.827531 0.019916
 0.017426 0.017319 0.947829 0.017426
 0.981471 0.017319 0.000552 0.000658
 0.947936 0.034087 0.000552 0.017426
 0.017480 0.017319 0.961336 0.003865
 0.017426 0.113710 0.029443 0.839421

MOTIF 4-YTCCCTCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 6.7e-001
 0.000999 0.563324 0.000838 0.434839
 0.000999 0.000838 0.236289 0.761874
 0.175155 0.746541 0.077306 0.000999
 0.000999 0.953292 0.044709 0.000999
 0.220599 0.701178 0.077224 0.000999
 0.000999 0.000838 0.000838 0.997326
 0.051964 0.946199 0.000838 0.000999
 0.000999 0.022682 0.204781 0.771538

MOTIF 5-ATAGGAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 9.5e-001
 0.917416 0.041452 0.022944 0.018188
 0.001575 0.285451 0.001320 0.711654
 0.875259 0.001320 0.041452 0.081968
 0.005260 0.001320 0.911452 0.081968
 0.018188 0.001320 0.938785 0.041707
 0.995785 0.001320 0.001320 0.001575
 0.988109 0.001320 0.008996 0.001575
 0.081968 0.041452 0.834808 0.041772

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TRIP13.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TRIP13/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.77 seconds
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