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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-CAGGCTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 1.2e-001
 0.000798 0.908051 0.000747 0.090404
 0.954802 0.000747 0.043653 0.000798
 0.036823 0.000747 0.950091 0.012339
 0.000798 0.000747 0.976238 0.022217
 0.108761 0.878153 0.000747 0.012339
 0.000798 0.009614 0.000747 0.988841
 0.036823 0.000747 0.940178 0.022251
 0.000798 0.000747 0.997657 0.000798

MOTIF 2-GCCTCCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 1.2e-001
 0.001135 0.001062 0.996668 0.001135
 0.001135 0.996668 0.001062 0.001135
 0.031597 0.905185 0.001062 0.062156
 0.001135 0.001062 0.013672 0.984130
 0.001135 0.996668 0.001062 0.001135
 0.001135 0.966206 0.031524 0.001135
 0.001135 0.966206 0.031524 0.001135
 0.718086 0.001062 0.279717 0.001135

MOTIF 3-ATTACAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 2.4e-001
 0.997357 0.000861 0.000861 0.000921
 0.000921 0.125176 0.000861 0.873043
 0.000921 0.000861 0.000861 0.997357
 0.997357 0.000861 0.000861 0.000921
 0.000921 0.922950 0.000861 0.075268
 0.997357 0.000861 0.000861 0.000921
 0.000921 0.000861 0.972595 0.025623
 0.000921 0.000861 0.947812 0.050406

MOTIF 4-AAATTAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.4e-001
 0.930389 0.001150 0.001150 0.067310
 0.930495 0.034138 0.001150 0.034217
 0.930495 0.034138 0.001150 0.034217
 0.001229 0.001150 0.001150 0.996470
 0.001229 0.001150 0.001150 0.996470
 0.996470 0.001150 0.001150 0.001229
 0.056712 0.001150 0.940908 0.001229
 0.001229 0.830386 0.001150 0.167235

MOTIF 5-GTGAGCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.023482 0.021973 0.931064 0.023482
 0.023482 0.021973 0.021973 0.932573
 0.023482 0.021973 0.931064 0.023482
 0.932573 0.021973 0.021973 0.023482
 0.023482 0.021973 0.931064 0.023482
 0.023482 0.931064 0.021973 0.023482
 0.023482 0.931064 0.021973 0.023482
 0.932573 0.021973 0.021973 0.023482

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TRIM25.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TRIM25/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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