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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.293 C 0.207 G 0.207 T 0.293 

MOTIF 1-TGATGMAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 151 P= 3.6e-003
 0.014140 0.014082 0.004834 0.966943
 0.000577 0.000408 0.995827 0.003188
 0.958073 0.000408 0.021742 0.019777
 0.000577 0.000408 0.004514 0.994501
 0.016854 0.000408 0.982161 0.000577
 0.328138 0.562534 0.000408 0.108921
 0.983950 0.010052 0.000408 0.005590
 0.998607 0.000408 0.000408 0.000577

MOTIF 2-AYTTCCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 5.0e-001
 0.961218 0.000527 0.037509 0.000746
 0.036093 0.338856 0.000527 0.624525
 0.018391 0.018200 0.025476 0.937932
 0.212855 0.000527 0.063480 0.723138
 0.018391 0.980336 0.000527 0.000746
 0.136858 0.667519 0.194877 0.000746
 0.106815 0.053547 0.000527 0.839111
 0.136407 0.862320 0.000527 0.000746

MOTIF 3-ATTTCACM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.3e-001
 0.996514 0.001021 0.001021 0.001445
 0.001445 0.001021 0.001021 0.996514
 0.001445 0.001021 0.035196 0.962339
 0.138365 0.001021 0.138052 0.722562
 0.001445 0.996090 0.001021 0.001445
 0.909539 0.053821 0.035196 0.001445
 0.001445 0.943290 0.001021 0.054245
 0.311874 0.520150 0.015168 0.152808

MOTIF 4-AKAAACCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.990882 0.002670 0.002670 0.003779
 0.003779 0.002670 0.630458 0.363093
 0.811803 0.002670 0.002670 0.182857
 0.990882 0.002670 0.002670 0.003779
 0.990882 0.002670 0.002670 0.003779
 0.003779 0.989773 0.002670 0.003779
 0.003779 0.900377 0.002670 0.093174
 0.990882 0.002670 0.002670 0.003779

MOTIF 5-AGATAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.935727 0.018818 0.018818 0.026636
 0.026636 0.018818 0.927909 0.026636
 0.935727 0.018818 0.018818 0.026636
 0.026636 0.018818 0.018818 0.935727
 0.935727 0.018818 0.018818 0.026636
 0.935727 0.018818 0.018818 0.026636
 0.026636 0.018818 0.927909 0.026636
 0.935727 0.018818 0.018818 0.026636

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TRIM24.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TRIM24/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	2.35 seconds
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