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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-CAGCCTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 4.8e-003
 0.001640 0.995614 0.001106 0.001640
 0.579682 0.231762 0.186917 0.001640
 0.001640 0.001106 0.995614 0.001640
 0.001640 0.995614 0.001106 0.001640
 0.001640 0.995614 0.001106 0.001640
 0.001640 0.001106 0.001106 0.996148
 0.039710 0.957544 0.001106 0.001640
 0.001640 0.881097 0.115623 0.001640

MOTIF 2-CGTGGTGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.1e-002
 0.002334 0.993757 0.001574 0.002334
 0.219605 0.001574 0.776487 0.002334
 0.002334 0.001574 0.001574 0.994517
 0.002334 0.055761 0.939570 0.002334
 0.002334 0.001574 0.993757 0.002334
 0.002334 0.001574 0.001574 0.994517
 0.002334 0.001574 0.993757 0.002334
 0.002334 0.001574 0.993757 0.002334

MOTIF 3-GGTCTCRA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.2e-001
 0.001521 0.142366 0.854592 0.001521
 0.001521 0.001026 0.995932 0.001521
 0.001521 0.001026 0.001026 0.996427
 0.107554 0.889899 0.001026 0.001521
 0.107782 0.001026 0.001026 0.890166
 0.001521 0.995932 0.001026 0.001521
 0.568481 0.071753 0.358246 0.001521
 0.783444 0.214009 0.001026 0.001521

MOTIF 4-CTACTAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.027145 0.927400 0.018309 0.027145
 0.027145 0.018309 0.018309 0.936236
 0.936236 0.018309 0.018309 0.027145
 0.027145 0.927400 0.018309 0.027145
 0.027145 0.018309 0.018309 0.936236
 0.936236 0.018309 0.018309 0.027145
 0.936236 0.018309 0.018309 0.027145
 0.936236 0.018309 0.018309 0.027145

MOTIF 5-GGATTACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 3.0e-001
 0.001299 0.000876 0.996525 0.001299
 0.001299 0.000876 0.996525 0.001299
 0.875859 0.000876 0.031039 0.092226
 0.001299 0.061299 0.000876 0.936526
 0.001299 0.000876 0.000876 0.996948
 0.954299 0.013363 0.031039 0.001299
 0.001299 0.953876 0.013363 0.031462
 0.906363 0.000876 0.031039 0.061722

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/THRAP3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_THRAP3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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