********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.179 C 0.321 G 0.321 T 0.179 

MOTIF 1-KGGCGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 4.8e-003
 0.000580 0.001041 0.634822 0.363557
 0.000580 0.001041 0.997798 0.000580
 0.000580 0.010346 0.988494 0.000580
 0.000580 0.985687 0.013152 0.000580
 0.000580 0.001041 0.997798 0.000580
 0.045607 0.001041 0.952772 0.000580
 0.965555 0.001041 0.010346 0.023057
 0.997337 0.001041 0.001041 0.000580

MOTIF 2-AAGATGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 5.0e-001
 0.919114 0.001198 0.001198 0.078490
 0.971079 0.001198 0.001198 0.026525
 0.047712 0.131323 0.820298 0.000667
 0.996937 0.001198 0.001198 0.000667
 0.000667 0.001198 0.001198 0.996937
 0.000667 0.001198 0.997467 0.000667
 0.000667 0.027055 0.960906 0.011372
 0.040617 0.879862 0.027055 0.052466

MOTIF 3-TGAGGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 6.5e-001
 0.000646 0.013681 0.001160 0.984513
 0.025688 0.001160 0.947464 0.025688
 0.921667 0.076527 0.001160 0.000646
 0.204074 0.140183 0.579892 0.075851
 0.075851 0.029239 0.869222 0.025688
 0.000646 0.947384 0.001160 0.050810
 0.000646 0.972506 0.026202 0.000646
 0.785583 0.001160 0.212611 0.000646

MOTIF 4-SGCAGTAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 7.9e-001
 0.000554 0.620554 0.378337 0.000554
 0.069108 0.043993 0.864864 0.022036
 0.155103 0.735802 0.044097 0.064999
 0.875399 0.080089 0.022477 0.022036
 0.000554 0.000995 0.997896 0.000554
 0.188499 0.101731 0.000995 0.708775
 0.677542 0.320909 0.000995 0.000554
 0.000554 0.065509 0.933382 0.000554

MOTIF 5-TAAGGGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.001806 0.003241 0.003241 0.991713
 0.991713 0.003241 0.003241 0.001806
 0.851578 0.143376 0.003241 0.001806
 0.001806 0.003241 0.993148 0.001806
 0.001806 0.003241 0.993148 0.001806
 0.001806 0.003241 0.923193 0.071761
 0.001806 0.923193 0.003241 0.071761
 0.991713 0.003241 0.003241 0.001806

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/THAP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_THAP1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c23n02.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.70 seconds
********************************************************************************