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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-AGATAAGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 175 P= 3.2e-006
 0.918232 0.022710 0.000362 0.058696
 0.000444 0.011536 0.987576 0.000444
 0.993245 0.000362 0.000362 0.006031
 0.020774 0.033992 0.007811 0.937423
 0.959249 0.000362 0.020692 0.019697
 0.958493 0.000362 0.019156 0.021989
 0.009178 0.033920 0.831319 0.125583
 0.228208 0.108769 0.568160 0.094863

MOTIF 2-TATCTGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.2e-001
 0.001833 0.001495 0.001495 0.995177
 0.995177 0.001495 0.001495 0.001833
 0.001833 0.001495 0.001495 0.995177
 0.001833 0.902418 0.001495 0.094254
 0.280897 0.001495 0.001495 0.716113
 0.020932 0.093916 0.790898 0.094254
 0.001833 0.001495 0.855984 0.140688
 0.995177 0.001495 0.001495 0.001833

MOTIF 3-ATTCCTGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 3.0e-001
 0.814921 0.001454 0.181842 0.001783
 0.046662 0.046334 0.014787 0.892217
 0.001783 0.001454 0.001454 0.995308
 0.001783 0.976401 0.020033 0.001783
 0.046662 0.874616 0.001454 0.077268
 0.067564 0.001454 0.046334 0.884648
 0.046662 0.010038 0.896637 0.046662
 0.046662 0.950100 0.001454 0.001783

MOTIF 4-WAACCACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 5.0e-001
 0.335820 0.073936 0.000788 0.589456
 0.783580 0.130264 0.085189 0.000967
 0.932204 0.000788 0.025119 0.041889
 0.049706 0.948539 0.000788 0.000967
 0.000967 0.948617 0.000788 0.049627
 0.778170 0.000788 0.220075 0.000967
 0.000967 0.953012 0.045054 0.000967
 0.914105 0.000788 0.000788 0.084318

MOTIF 5-AGCTGCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.995015 0.001545 0.001545 0.001895
 0.145646 0.001545 0.850914 0.001895
 0.001895 0.994666 0.001545 0.001895
 0.001895 0.144757 0.049231 0.804117
 0.155134 0.001545 0.841427 0.001895
 0.001895 0.994666 0.001545 0.001895
 0.851957 0.049231 0.096917 0.001895
 0.001895 0.001545 0.994666 0.001895

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TEAD4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TEAD4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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