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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-RCATTCCW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 143 P= 7.0e-002
 0.558942 0.000344 0.404566 0.036147
 0.091588 0.897846 0.010200 0.000366
 0.994873 0.000344 0.004418 0.000366
 0.000366 0.000344 0.000344 0.998946
 0.000366 0.000344 0.000344 0.998946
 0.000366 0.998924 0.000344 0.000366
 0.000366 0.928209 0.000344 0.071081
 0.372277 0.096696 0.069577 0.461450

MOTIF 2-YAGGTGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 9.5e-002
 0.187925 0.437973 0.000414 0.373688
 0.815640 0.024125 0.024125 0.136111
 0.000441 0.000414 0.998704 0.000441
 0.289024 0.000414 0.617206 0.093356
 0.071801 0.047854 0.162441 0.717904
 0.000441 0.029032 0.970086 0.000441
 0.120833 0.000414 0.825945 0.052807
 0.000441 0.983308 0.000414 0.015837

MOTIF 3-AAGTATTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.994954 0.001647 0.001647 0.001752
 0.900560 0.001647 0.001647 0.096146
 0.001752 0.001647 0.853029 0.143572
 0.238884 0.143467 0.001647 0.616001
 0.994954 0.001647 0.001647 0.001752
 0.001752 0.001647 0.001647 0.994954
 0.048873 0.096041 0.001647 0.853438
 0.805555 0.001647 0.001647 0.191151

MOTIF 4-CCACTAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.002205 0.993516 0.002073 0.002205
 0.002205 0.968962 0.002073 0.026759
 0.993648 0.002073 0.002073 0.002205
 0.002205 0.993516 0.002073 0.002205
 0.002205 0.002073 0.061387 0.934334
 0.993648 0.002073 0.002073 0.002205
 0.002205 0.002073 0.993516 0.002205
 0.192810 0.061387 0.505191 0.240611

MOTIF 5-GTGACAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.003211 0.003019 0.990559 0.003211
 0.003211 0.003019 0.003019 0.990751
 0.089581 0.003019 0.904189 0.003211
 0.990751 0.003019 0.003019 0.003211
 0.003211 0.817541 0.003019 0.176228
 0.818011 0.089389 0.003019 0.089581
 0.904381 0.003019 0.003019 0.089581
 0.731225 0.176036 0.003019 0.089720

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TEAD2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TEAD2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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