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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.231 C 0.27 G 0.27 T 0.231 

MOTIF 1-CWTCAAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 4.8e-003
 0.018973 0.892566 0.078668 0.009792
 0.558424 0.000714 0.000714 0.440148
 0.055877 0.008316 0.000714 0.935094
 0.000611 0.887533 0.055980 0.055877
 0.997961 0.000714 0.000714 0.000611
 0.966192 0.004226 0.010608 0.018973
 0.990360 0.000714 0.008316 0.000611
 0.008212 0.000714 0.982862 0.008212

MOTIF 2-AAAGAGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.5e-002
 0.951987 0.014257 0.032708 0.001047
 0.816498 0.005901 0.159590 0.018011
 0.962430 0.032708 0.003815 0.001047
 0.001047 0.047371 0.919051 0.032531
 0.821724 0.064293 0.049866 0.064116
 0.032531 0.001224 0.838652 0.127593
 0.036350 0.007246 0.955357 0.001047
 0.901850 0.032708 0.001224 0.064218

MOTIF 3-AGTTGGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.4e-001
 0.834058 0.066197 0.033730 0.066015
 0.033547 0.080023 0.820415 0.066015
 0.163731 0.001262 0.007472 0.827534
 0.033547 0.001262 0.001262 0.963928
 0.098587 0.098665 0.769201 0.033547
 0.001080 0.098979 0.866394 0.033547
 0.001080 0.001262 0.001262 0.996396
 0.833849 0.066302 0.066302 0.033547

MOTIF 4-AGAAACCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.931525 0.064029 0.002396 0.002050
 0.002050 0.002396 0.870042 0.125513
 0.807665 0.002396 0.002396 0.187543
 0.993158 0.002396 0.002396 0.002050
 0.993158 0.002396 0.002396 0.002050
 0.002050 0.993505 0.002396 0.002050
 0.002050 0.993505 0.002396 0.002050
 0.745433 0.002396 0.250121 0.002050

MOTIF 5-TAATGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.6e-001
 0.061472 0.079413 0.001514 0.857601
 0.683263 0.079539 0.196954 0.040245
 0.995676 0.001514 0.001514 0.001295
 0.022282 0.118488 0.079539 0.779691
 0.040245 0.001514 0.917996 0.040245
 0.917777 0.001514 0.040464 0.040245
 0.940603 0.017638 0.040464 0.001295
 0.839690 0.040464 0.040527 0.079320

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TCF7L2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TCF7L2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.41 seconds
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