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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.25 C 0.25 G 0.25 T 0.25 

MOTIF 1-CATCAAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 185 P= 1.5e-006
 0.000274 0.688397 0.309006 0.002323
 0.757705 0.015582 0.000274 0.226439
 0.026339 0.000274 0.000274 0.973113
 0.005344 0.994107 0.000274 0.000274
 0.991573 0.000274 0.000274 0.007879
 0.980730 0.000274 0.018722 0.000274
 0.969810 0.000274 0.029642 0.000274
 0.035614 0.035928 0.928183 0.000274

MOTIF 2-GAAACCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 3.3e-001
 0.072115 0.030777 0.776925 0.120183
 0.929371 0.009074 0.030777 0.030777
 0.880478 0.051035 0.055118 0.013369
 0.894938 0.090621 0.013369 0.001071
 0.015924 0.892527 0.090477 0.001071
 0.060579 0.877866 0.030777 0.030777
 0.895179 0.013369 0.030777 0.060675
 0.030777 0.951074 0.017077 0.001071

MOTIF 3-CCTCCCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 6.7e-001
 0.001104 0.935364 0.001104 0.062428
 0.001104 0.996688 0.001104 0.001104
 0.067037 0.001104 0.053851 0.878008
 0.031717 0.966075 0.001104 0.001104
 0.001104 0.996688 0.001104 0.001104
 0.001104 0.829284 0.062428 0.107184
 0.264593 0.709551 0.024752 0.001104
 0.072858 0.890607 0.035430 0.001104

MOTIF 4-CTGATAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 9.7e-001
 0.051143 0.746889 0.001780 0.200188
 0.001780 0.051143 0.001780 0.945296
 0.001780 0.001780 0.994659 0.001780
 0.895775 0.001780 0.100664 0.001780
 0.001780 0.001780 0.001780 0.994659
 0.874914 0.001780 0.001780 0.121525
 0.895934 0.051143 0.051143 0.001780
 0.001780 0.011222 0.902192 0.084806

MOTIF 5-CTGTGTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002953 0.991142 0.002953 0.002953
 0.002953 0.002953 0.002953 0.991142
 0.084814 0.002953 0.909281 0.002953
 0.002953 0.084814 0.002953 0.909281
 0.002953 0.002953 0.991142 0.002953
 0.002953 0.002953 0.002953 0.991142
 0.166938 0.827157 0.002953 0.002953
 0.002953 0.909281 0.084814 0.002953

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TCF7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TCF7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.91 seconds
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