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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.257 C 0.243 G 0.243 T 0.257 

MOTIF 1-AGATAAGR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 202 P= 2.1e-002
 0.764495 0.035592 0.020098 0.179815
 0.000280 0.004492 0.994949 0.000280
 0.999192 0.000264 0.000264 0.000280
 0.000280 0.003177 0.000264 0.996279
 0.903886 0.000264 0.000264 0.095585
 0.886650 0.007805 0.072928 0.032617
 0.004281 0.105477 0.850442 0.039801
 0.418231 0.196065 0.370886 0.014818

MOTIF 2-CAGCTGCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 81 P= 9.8e-002
 0.011499 0.917454 0.069993 0.001055
 0.996951 0.000997 0.000997 0.001055
 0.016379 0.020320 0.885753 0.077548
 0.062313 0.760058 0.062255 0.115374
 0.001055 0.000997 0.000997 0.996951
 0.173092 0.011412 0.808702 0.006794
 0.025558 0.895732 0.069993 0.008717
 0.223532 0.022329 0.016322 0.737817

MOTIF 3-AAACATTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.2e-001
 0.932455 0.022091 0.022091 0.023364
 0.932455 0.022091 0.022091 0.023364
 0.932455 0.022091 0.022091 0.023364
 0.023364 0.931182 0.022091 0.023364
 0.932455 0.022091 0.022091 0.023364
 0.023364 0.022091 0.022091 0.932455
 0.023364 0.022091 0.022091 0.932455
 0.023364 0.931182 0.022091 0.023364

MOTIF 4-ACATCTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.991244 0.002864 0.002864 0.003029
 0.003029 0.991079 0.002864 0.003029
 0.827609 0.002864 0.166499 0.003029
 0.003029 0.002864 0.002864 0.991244
 0.003029 0.827444 0.002864 0.166664
 0.003029 0.002864 0.002864 0.991244
 0.003029 0.002864 0.991079 0.003029
 0.003029 0.002864 0.991079 0.003029

MOTIF 5-GGGAYTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.059856 0.002023 0.912088 0.026033
 0.002140 0.002023 0.993697 0.002140
 0.002140 0.059739 0.935981 0.002140
 0.993813 0.002023 0.002023 0.002140
 0.002140 0.546290 0.117641 0.333928
 0.002140 0.002023 0.002023 0.993813
 0.993813 0.002023 0.002023 0.002140
 0.002140 0.762461 0.117641 0.117758

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TCF12.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TCF12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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