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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.234 C 0.266 G 0.266 T 0.234 

MOTIF 1-GTGGCTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 4.3e-005
 0.000905 0.001029 0.997161 0.000905
 0.000905 0.001029 0.001029 0.997038
 0.163046 0.001029 0.835021 0.000905
 0.027711 0.001029 0.970355 0.000905
 0.000905 0.894341 0.046115 0.058639
 0.000905 0.001029 0.001029 0.997038
 0.000905 0.997161 0.001029 0.000905
 0.889294 0.001029 0.108772 0.000905

MOTIF 2-GTAGAGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.001027 0.001167 0.996780 0.001027
 0.001027 0.001167 0.001167 0.996639
 0.966229 0.031577 0.001167 0.001027
 0.001027 0.001167 0.966370 0.031437
 0.905311 0.001167 0.062085 0.031437
 0.001027 0.001167 0.996780 0.001027
 0.001027 0.962681 0.035266 0.001027
 0.750179 0.001167 0.247628 0.001027

MOTIF 3-ATAGCTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.4e-001
 0.996095 0.001356 0.001356 0.001193
 0.001193 0.001356 0.001356 0.996095
 0.996095 0.001356 0.001356 0.001193
 0.001193 0.001356 0.996258 0.001193
 0.001193 0.960919 0.001356 0.036532
 0.107550 0.001356 0.072147 0.818947
 0.001193 0.960919 0.001356 0.036532
 0.960756 0.001356 0.036695 0.001193

MOTIF 4-CGCCTGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 3.0e-001
 0.001581 0.806784 0.001797 0.189837
 0.001581 0.001797 0.995040 0.001581
 0.001581 0.995040 0.001797 0.001581
 0.048418 0.807542 0.048634 0.095406
 0.001581 0.001797 0.001797 0.994824
 0.095406 0.001797 0.901216 0.001581
 0.001581 0.001797 0.001797 0.994824
 0.994824 0.001797 0.001797 0.001581

MOTIF 5-TMACCACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.001445 0.001642 0.001642 0.995271
 0.442826 0.511291 0.044438 0.001445
 0.909541 0.001642 0.087372 0.001445
 0.044241 0.952672 0.001642 0.001445
 0.044241 0.952672 0.001642 0.001445
 0.995271 0.001642 0.001642 0.001445
 0.001445 0.880692 0.044438 0.073425
 0.001445 0.001642 0.009828 0.987085

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TBP.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TBP/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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