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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.192 C 0.308 G 0.308 T 0.192 

MOTIF 1-GTTCGAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.0e-001
 0.324473 0.001186 0.660265 0.014076
 0.189117 0.095459 0.001186 0.714237
 0.000738 0.001186 0.001186 0.996890
 0.000738 0.890140 0.001186 0.107936
 0.107936 0.001186 0.890140 0.000738
 0.996890 0.001186 0.001186 0.000738
 0.714237 0.001186 0.095459 0.189117
 0.014076 0.660265 0.001186 0.324473

MOTIF 2-CKACGGSG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 5.0e-001
 0.064348 0.889058 0.046005 0.000588
 0.000588 0.000945 0.335525 0.662942
 0.997523 0.000945 0.000945 0.000588
 0.000588 0.834920 0.163904 0.000588
 0.000588 0.042350 0.882127 0.074935
 0.073108 0.000945 0.925360 0.000588
 0.079492 0.315881 0.497623 0.107004
 0.122972 0.000945 0.717630 0.158453

MOTIF 3-CTGGGAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.160936 0.835242 0.002356 0.001466
 0.001466 0.002356 0.002356 0.993822
 0.107608 0.002356 0.782428 0.107608
 0.001466 0.002356 0.994712 0.001466
 0.001466 0.055342 0.941726 0.001466
 0.940836 0.002356 0.002356 0.054452
 0.904703 0.091475 0.002356 0.001466
 0.001466 0.055427 0.782171 0.160936

MOTIF 4-CAGTGGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001894 0.856089 0.003043 0.138975
 0.855160 0.071473 0.071473 0.001894
 0.070324 0.140124 0.787658 0.001894
 0.001894 0.003043 0.071473 0.923591
 0.001894 0.003043 0.993170 0.001894
 0.030222 0.003043 0.964842 0.001894
 0.001894 0.003043 0.003043 0.992021
 0.992021 0.003043 0.003043 0.001894

MOTIF 5-CTGAGCTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.001395 0.692160 0.153646 0.152799
 0.001395 0.052656 0.052656 0.893294
 0.001395 0.305212 0.691998 0.001395
 0.994122 0.002242 0.002242 0.001395
 0.001395 0.002242 0.994968 0.001395
 0.022265 0.923685 0.052656 0.001395
 0.001395 0.002242 0.002242 0.994122
 0.994122 0.002242 0.002242 0.001395

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TARDBP.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TARDBP/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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