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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.221 C 0.279 G 0.279 T 0.221 

MOTIF 1-AHCAGCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 130 P= 6.1e-003
 0.727188 0.164790 0.000521 0.107501
 0.313692 0.441640 0.000521 0.244147
 0.000413 0.992185 0.000521 0.006882
 0.998546 0.000521 0.000521 0.000413
 0.000413 0.000521 0.998654 0.000413
 0.000413 0.998654 0.000521 0.000413
 0.000413 0.000521 0.000521 0.998546
 0.000413 0.000521 0.998654 0.000413

MOTIF 2-ATGACTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 78 P= 2.3e-001
 0.663388 0.116439 0.219612 0.000561
 0.000561 0.018309 0.000708 0.980422
 0.000561 0.000708 0.962969 0.035761
 0.927565 0.018309 0.000708 0.053418
 0.088903 0.744673 0.146127 0.020296
 0.007847 0.000708 0.018309 0.973136
 0.156008 0.779998 0.010576 0.053418
 0.980422 0.000708 0.018309 0.000561

MOTIF 3-CCCCCACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 5.0e-001
 0.000848 0.838262 0.035271 0.125618
 0.091998 0.906083 0.001071 0.000848
 0.065391 0.772187 0.161573 0.000848
 0.049256 0.857675 0.092221 0.000848
 0.000848 0.729348 0.268956 0.000848
 0.997010 0.001071 0.001071 0.000848
 0.000848 0.997232 0.001071 0.000848
 0.000848 0.997232 0.001071 0.000848

MOTIF 4-AGATGGCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.954362 0.001651 0.042678 0.001308
 0.207770 0.249809 0.500019 0.042401
 0.995389 0.001651 0.001651 0.001308
 0.001308 0.001651 0.001651 0.995389
 0.001308 0.001651 0.995732 0.001308
 0.001308 0.001651 0.954706 0.042335
 0.001308 0.995732 0.001651 0.001308
 0.001308 0.001651 0.995732 0.001308

MOTIF 5-CCACAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.001487 0.808047 0.188979 0.001487
 0.001487 0.995150 0.001877 0.001487
 0.901359 0.001877 0.095277 0.001487
 0.001487 0.901900 0.001877 0.094737
 0.760731 0.001877 0.235906 0.001487
 0.994760 0.001877 0.001877 0.001487
 0.001487 0.001877 0.995150 0.001487
 0.854735 0.001877 0.001877 0.141512

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TAF9B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TAF9B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.80 seconds
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