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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.214 C 0.286 G 0.286 T 0.214 

MOTIF 1-GGGYGAGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 4.8e-003
 0.000894 0.001196 0.997016 0.000894
 0.000894 0.030170 0.968042 0.000894
 0.029868 0.001196 0.952431 0.016505
 0.000894 0.418331 0.001196 0.579579
 0.008700 0.001196 0.983668 0.006436
 0.996714 0.001196 0.001196 0.000894
 0.000894 0.296176 0.673062 0.029868
 0.000894 0.001196 0.997016 0.000894

MOTIF 2-ACTCCCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 2.5e-002
 0.928536 0.026009 0.026009 0.019445
 0.019445 0.935100 0.026009 0.019445
 0.019445 0.026009 0.026009 0.928536
 0.019445 0.935100 0.026009 0.019445
 0.019445 0.935100 0.026009 0.019445
 0.019445 0.935100 0.026009 0.019445
 0.019445 0.026009 0.026009 0.928536
 0.019445 0.026009 0.935100 0.019445

MOTIF 3-GAGGCAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.5e-002
 0.000958 0.001281 0.965765 0.031996
 0.996480 0.001281 0.001281 0.000958
 0.000958 0.001281 0.996803 0.000958
 0.000958 0.001281 0.839063 0.158698
 0.000958 0.996803 0.001281 0.000958
 0.996480 0.001281 0.001281 0.000958
 0.996480 0.001281 0.001281 0.000958
 0.289480 0.001281 0.001281 0.707958

MOTIF 4-CGYGCRCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 1.2e-001
 0.000982 0.980784 0.017252 0.000982
 0.016946 0.001314 0.980759 0.000982
 0.000982 0.483106 0.017226 0.498686
 0.032858 0.129596 0.756590 0.080956
 0.080956 0.756590 0.129596 0.032858
 0.498686 0.017226 0.483106 0.000982
 0.000982 0.980759 0.001314 0.016946
 0.000982 0.017252 0.980784 0.000982

MOTIF 5-ACAGTGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 3.3e-001
 0.995180 0.001754 0.001754 0.001312
 0.001312 0.995623 0.001754 0.001312
 0.952680 0.044254 0.001754 0.001312
 0.001312 0.001754 0.995623 0.001312
 0.001312 0.001754 0.001754 0.995180
 0.129223 0.001754 0.867711 0.001312
 0.001312 0.087029 0.910348 0.001312
 0.001312 0.001754 0.995623 0.001312

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TAF7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TAF7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	1.77 seconds
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