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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.156 C 0.344 G 0.344 T 0.156 

MOTIF 1-AAGATGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 5.3e-003
 0.997745 0.000920 0.000920 0.000416
 0.942213 0.019431 0.019431 0.018926
 0.126408 0.140405 0.547425 0.185762
 0.960664 0.000920 0.000920 0.037497
 0.000416 0.019431 0.000920 0.979234
 0.000416 0.000920 0.979738 0.018926
 0.000416 0.000920 0.998249 0.000416
 0.000416 0.998249 0.000920 0.000416

MOTIF 2-CCCGCCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 2.4e-002
 0.000776 0.996730 0.001718 0.000776
 0.000776 0.996730 0.001718 0.000776
 0.000776 0.996730 0.001718 0.000776
 0.098018 0.001718 0.899489 0.000776
 0.035348 0.927586 0.001718 0.035348
 0.000776 0.996730 0.001718 0.000776
 0.000776 0.996730 0.001718 0.000776
 0.000776 0.996730 0.001718 0.000776

MOTIF 3-GCTGCAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 1.7e-001
 0.010057 0.026454 0.963058 0.000431
 0.000431 0.823412 0.061119 0.115038
 0.233831 0.126887 0.030327 0.608955
 0.000431 0.059012 0.933718 0.006838
 0.006838 0.933718 0.059012 0.000431
 0.608955 0.030327 0.126887 0.233831
 0.115038 0.061119 0.823412 0.000431
 0.000431 0.963058 0.026454 0.010057

MOTIF 4-CCTCAGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 2.1e-001
 0.053487 0.944608 0.001312 0.000593
 0.026998 0.783392 0.109548 0.080062
 0.095462 0.001312 0.001312 0.901914
 0.026998 0.971098 0.001312 0.000593
 0.879274 0.001312 0.001312 0.118102
 0.026998 0.063203 0.906782 0.003017
 0.106467 0.709174 0.093366 0.090993
 0.000593 0.997503 0.001312 0.000593

MOTIF 5-ACCTCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 1.0e+000
 0.863874 0.100065 0.032521 0.003540
 0.062758 0.898679 0.037868 0.000695
 0.000695 0.820034 0.169371 0.009899
 0.000695 0.001539 0.076695 0.921071
 0.062658 0.909457 0.014365 0.013521
 0.062658 0.780001 0.094583 0.062758
 0.000695 0.935107 0.032521 0.031677
 0.156203 0.094783 0.735494 0.013521

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/TAF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_TAF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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