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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-TCCTGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 228 P= 5.3e-010
 0.000245 0.000193 0.000193 0.999369
 0.000245 0.999317 0.000193 0.000245
 0.000245 0.722799 0.000193 0.276763
 0.000245 0.307367 0.000193 0.692195
 0.285887 0.006264 0.707605 0.000245
 0.000245 0.000193 0.996973 0.002589
 0.993298 0.000193 0.000193 0.006315
 0.999369 0.000193 0.000193 0.000245

MOTIF 2-AGGGGTGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 103 P= 2.4e-002
 0.975773 0.000357 0.019680 0.004190
 0.046274 0.011572 0.933039 0.009115
 0.051156 0.011572 0.936820 0.000452
 0.045675 0.000357 0.950495 0.003473
 0.020856 0.006400 0.972293 0.000452
 0.038624 0.045654 0.000357 0.915365
 0.022954 0.000357 0.968761 0.007928
 0.013656 0.000357 0.966673 0.019314

MOTIF 3-ATTCATGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 2.5e-002
 0.934482 0.020064 0.020064 0.025391
 0.025391 0.020064 0.020064 0.934482
 0.025391 0.020064 0.020064 0.934482
 0.025391 0.929155 0.020064 0.025391
 0.934482 0.020064 0.020064 0.025391
 0.025391 0.020064 0.020064 0.934482
 0.025391 0.020064 0.929155 0.025391
 0.934482 0.020064 0.020064 0.025391

MOTIF 4-GCTAAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 2.4e-001
 0.025391 0.020064 0.929155 0.025391
 0.025391 0.929155 0.020064 0.025391
 0.025391 0.020064 0.020064 0.934482
 0.934482 0.020064 0.020064 0.025391
 0.934482 0.020064 0.020064 0.025391
 0.934482 0.020064 0.020064 0.025391
 0.025391 0.929155 0.020064 0.025391
 0.934482 0.020064 0.020064 0.025391

MOTIF 5-ATATGGTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 3.7e-001
 0.973551 0.000400 0.012971 0.013078
 0.000507 0.027087 0.000400 0.972006
 0.860006 0.012971 0.063417 0.063605
 0.006792 0.038154 0.038113 0.916941
 0.272242 0.000400 0.714280 0.013078
 0.235839 0.000400 0.763254 0.000507
 0.000507 0.000400 0.000400 0.998693
 0.000507 0.998587 0.000400 0.000507

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/STAT5A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_STAT5A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.35 seconds
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