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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-AAYGAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 149 P= 9.6e-004
 0.999109 0.000292 0.000292 0.000307
 0.552685 0.203354 0.047128 0.196833
 0.000307 0.549875 0.056261 0.393557
 0.008637 0.000292 0.990764 0.000307
 0.999109 0.000292 0.000292 0.000307
 0.982503 0.000292 0.016898 0.000307
 0.999109 0.000292 0.000292 0.000307
 0.000307 0.870592 0.128794 0.000307

MOTIF 2-TCYMRGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 87 P= 5.3e-003
 0.000655 0.000623 0.000623 0.998098
 0.143048 0.855674 0.000623 0.000655
 0.000655 0.566598 0.000623 0.432124
 0.547209 0.451513 0.000623 0.000655
 0.457035 0.018344 0.523966 0.000655
 0.000655 0.000623 0.962569 0.036153
 0.980378 0.000623 0.000623 0.018375
 0.998098 0.000623 0.000623 0.000655

MOTIF 3-AGGCAGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.5e-002
 0.736203 0.001308 0.203652 0.058837
 0.001375 0.001308 0.995942 0.001375
 0.113314 0.001308 0.884004 0.001375
 0.143838 0.816286 0.001308 0.038568
 0.772190 0.038501 0.187934 0.001375
 0.001375 0.058771 0.938480 0.001375
 0.915903 0.001308 0.081414 0.001375
 0.001375 0.038501 0.921496 0.038628

MOTIF 4-ATGACTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.812573 0.001286 0.111530 0.074611
 0.001352 0.001286 0.001286 0.996076
 0.021056 0.016425 0.904666 0.057853
 0.996076 0.001286 0.001286 0.001352
 0.001352 0.834038 0.090000 0.074611
 0.037922 0.185324 0.037857 0.738897
 0.037922 0.959440 0.001286 0.001352
 0.849440 0.001286 0.037857 0.111417

MOTIF 5-CTTATCTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.113623 0.659017 0.113738 0.113623
 0.001378 0.001312 0.001312 0.995998
 0.001378 0.001312 0.001312 0.995998
 0.995998 0.001312 0.001312 0.001378
 0.001378 0.001312 0.019959 0.977351
 0.001378 0.995931 0.001312 0.001378
 0.064106 0.064039 0.008445 0.863410
 0.001378 0.715044 0.151213 0.132364

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/STAT2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_STAT2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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