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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.298 C 0.202 G 0.202 T 0.298 

MOTIF 1-AAAAGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.980533 0.005592 0.005592 0.008284
 0.788178 0.197947 0.005592 0.008284
 0.980533 0.005592 0.005592 0.008284
 0.980533 0.005592 0.005592 0.008284
 0.008284 0.005592 0.785486 0.200639
 0.008284 0.977841 0.005592 0.008284
 0.788178 0.005592 0.197947 0.008284
 0.008284 0.005592 0.785486 0.200639

MOTIF 2-GGAAACAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.027136 0.018318 0.927409 0.027136
 0.027136 0.018318 0.927409 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.927409 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136

MOTIF 3-ACAGCATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.927409 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.018318 0.927409 0.027136
 0.027136 0.927409 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.018318 0.018318 0.936227
 0.027136 0.018318 0.018318 0.936227

MOTIF 4-ATTTTGAH STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.975580 0.007015 0.007015 0.010391
 0.010391 0.007015 0.248312 0.734282
 0.010391 0.007015 0.007015 0.975580
 0.010391 0.007015 0.007015 0.975580
 0.010391 0.007015 0.007015 0.975580
 0.010391 0.007015 0.972203 0.010391
 0.975580 0.007015 0.007015 0.010391
 0.492985 0.248312 0.007015 0.251688

MOTIF 5-TATGAGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.027136 0.018318 0.018318 0.936227
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.018318 0.018318 0.936227
 0.027136 0.018318 0.927409 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.027136 0.018318 0.927409 0.027136
 0.936227 0.018318 0.018318 0.027136
 0.936227 0.018318 0.018318 0.027136

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SRSF9.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SRSF9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	0.38 seconds
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