********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.177 C 0.323 G 0.323 T 0.177 

MOTIF 1-GCCGCCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 2.9e-001
 0.002508 0.004565 0.990419 0.002508
 0.002508 0.696271 0.004565 0.296657
 0.002508 0.990419 0.004565 0.002508
 0.100558 0.004565 0.892370 0.002508
 0.100558 0.695512 0.004565 0.199366
 0.002508 0.990419 0.004565 0.002508
 0.988362 0.004565 0.004565 0.002508
 0.002508 0.892370 0.004565 0.100558

MOTIF 2-AACMCGGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.899727 0.002195 0.096871 0.001206
 0.899358 0.002195 0.097240 0.001206
 0.001206 0.995392 0.002195 0.001206
 0.473861 0.380906 0.096871 0.048362
 0.189829 0.759614 0.002195 0.048362
 0.001206 0.002195 0.853925 0.142673
 0.143038 0.049351 0.806405 0.001206
 0.095518 0.002195 0.901081 0.001206

MOTIF 3-CCGGGTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 5.0e-001
 0.016118 0.938427 0.029336 0.016118
 0.016118 0.938427 0.029336 0.016118
 0.016118 0.029336 0.938427 0.016118
 0.016118 0.029336 0.938427 0.016118
 0.016118 0.029336 0.938427 0.016118
 0.016118 0.029336 0.029336 0.925209
 0.016118 0.938427 0.029336 0.016118
 0.016118 0.029336 0.029336 0.925209

MOTIF 4-CCGCGTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.001744 0.925155 0.003174 0.069927
 0.001744 0.650305 0.209314 0.138637
 0.069927 0.003174 0.856972 0.069927
 0.001744 0.965214 0.003174 0.029867
 0.069927 0.003174 0.925155 0.001744
 0.001744 0.003174 0.003174 0.991907
 0.001744 0.993338 0.003174 0.001744
 0.001744 0.993338 0.003174 0.001744

MOTIF 5-AGGGCACG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.989379 0.004166 0.004166 0.002289
 0.091772 0.093649 0.812291 0.002289
 0.002289 0.274702 0.720720 0.002289
 0.091772 0.004166 0.901774 0.002289
 0.002289 0.901774 0.093649 0.002289
 0.899896 0.004166 0.004166 0.091772
 0.002289 0.991256 0.004166 0.002289
 0.002289 0.093649 0.901774 0.002289

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SRSF7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SRSF7/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.07 seconds
********************************************************************************