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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.18 C 0.32 G 0.32 T 0.18 

MOTIF 1-GCCCAGRA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 6.5e-001
 0.000618 0.001099 0.997665 0.000618
 0.000618 0.898095 0.001099 0.100189
 0.000618 0.921190 0.001099 0.077093
 0.143945 0.735117 0.024897 0.096041
 0.784545 0.114179 0.100659 0.000618
 0.000618 0.001099 0.991254 0.007029
 0.413854 0.001099 0.584430 0.000618
 0.922130 0.001099 0.001099 0.075672

MOTIF 2-CAGGCGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 9.5e-001
 0.001413 0.877480 0.119694 0.001413
 0.907243 0.025035 0.066310 0.001413
 0.165162 0.111502 0.699400 0.023936
 0.055821 0.002512 0.940255 0.001413
 0.001413 0.994662 0.002512 0.001413
 0.001413 0.002512 0.994662 0.001413
 0.001413 0.002512 0.940255 0.055821
 0.001413 0.994662 0.002512 0.001413

MOTIF 3-CCCGTGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.7e-001
 0.039515 0.825845 0.117696 0.016944
 0.078154 0.880553 0.040293 0.001000
 0.001000 0.957707 0.040293 0.001000
 0.001000 0.001778 0.996222 0.001000
 0.001000 0.165283 0.001778 0.831939
 0.001000 0.118071 0.863984 0.016944
 0.039515 0.862739 0.058231 0.039515
 0.001000 0.919068 0.078932 0.001000

MOTIF 4-ACTCGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.863781 0.002964 0.131587 0.001667
 0.001667 0.993701 0.002964 0.001667
 0.001667 0.131587 0.067173 0.799573
 0.001667 0.967121 0.002964 0.028247
 0.001667 0.002964 0.929493 0.065876
 0.799573 0.002964 0.131587 0.065876
 0.001667 0.002964 0.993701 0.001667
 0.735365 0.131587 0.067173 0.065876

MOTIF 5-AGTGAGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.854069 0.142562 0.002156 0.001213
 0.001213 0.002156 0.995418 0.001213
 0.001213 0.002156 0.002156 0.994475
 0.001213 0.002156 0.995418 0.001213
 0.684660 0.311971 0.002156 0.001213
 0.001213 0.048858 0.808612 0.141318
 0.001213 0.095559 0.789279 0.113949
 0.001213 0.002156 0.902015 0.094616

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SRSF3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SRSF3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.79 seconds
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