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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.23 C 0.27 G 0.27 T 0.23 

MOTIF 1-TCACTGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001113 0.007714 0.007714 0.983458
 0.001113 0.862313 0.101949 0.034625
 0.814194 0.136003 0.034817 0.014986
 0.001113 0.944901 0.001304 0.052682
 0.057479 0.135408 0.034817 0.772297
 0.135378 0.019361 0.743503 0.101758
 0.101758 0.848440 0.001304 0.048498
 0.001113 0.906591 0.057670 0.034625

MOTIF 2-CGGGGCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001
 0.001366 0.954527 0.001601 0.042505
 0.001366 0.001601 0.995666 0.001366
 0.013588 0.042740 0.878747 0.064925
 0.083909 0.167561 0.701034 0.047495
 0.001366 0.001601 0.895870 0.101162
 0.070560 0.885334 0.001601 0.042505
 0.995431 0.001601 0.001601 0.001366
 0.001366 0.084011 0.913256 0.001366

MOTIF 3-AGTCCACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 9.5e-001
 0.556540 0.135025 0.135415 0.173020
 0.081669 0.001043 0.916398 0.000890
 0.027686 0.098246 0.001043 0.873025
 0.027686 0.916788 0.001043 0.054483
 0.054483 0.809516 0.135111 0.000890
 0.809277 0.054722 0.054722 0.081279
 0.188637 0.701985 0.081691 0.027686
 0.027686 0.014441 0.956983 0.000890

MOTIF 4-TACCAGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.053806 0.002027 0.054103 0.890064
 0.994216 0.002027 0.002027 0.001729
 0.001729 0.838118 0.106347 0.053806
 0.001729 0.994514 0.002027 0.001729
 0.889896 0.002027 0.106347 0.001729
 0.001729 0.002027 0.890194 0.106050
 0.890064 0.002027 0.054103 0.053806
 0.890064 0.002027 0.054103 0.053806

MOTIF 5-ACGTGCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.818536 0.002268 0.002268 0.176928
 0.001935 0.993862 0.002268 0.001935
 0.001935 0.002268 0.993862 0.001935
 0.177021 0.002268 0.177637 0.643074
 0.060203 0.060536 0.877325 0.001935
 0.235196 0.526964 0.060536 0.177304
 0.060203 0.935593 0.002268 0.001935
 0.060203 0.060536 0.877325 0.001935

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SRSF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SRSF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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