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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-AGGAAGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 243 P= 2.1e-013
 0.874131 0.009073 0.116597 0.000199
 0.000199 0.000182 0.999420 0.000199
 0.000199 0.000182 0.999420 0.000199
 0.991962 0.002371 0.000182 0.005485
 0.993667 0.005468 0.000666 0.000199
 0.007030 0.030443 0.962328 0.000199
 0.000199 0.005477 0.000182 0.994142
 0.003405 0.068952 0.911859 0.015785

MOTIF 2-MTGACCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 9.5e-002
 0.357612 0.514144 0.001178 0.127065
 0.001284 0.035310 0.001178 0.962228
 0.172163 0.001178 0.791244 0.035416
 0.996360 0.001178 0.001178 0.001284
 0.001284 0.996254 0.001178 0.001284
 0.241198 0.756340 0.001178 0.001284
 0.620141 0.172167 0.103683 0.104010
 0.069548 0.859727 0.001178 0.069548

MOTIF 3-GGCAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001
 0.002283 0.002094 0.993340 0.002283
 0.002283 0.002094 0.993340 0.002283
 0.002283 0.932664 0.002094 0.062959
 0.968412 0.027212 0.002094 0.002283
 0.002283 0.002094 0.871598 0.124026
 0.688186 0.307437 0.002094 0.002283
 0.871983 0.002094 0.002094 0.123830
 0.932854 0.002094 0.002094 0.062959

MOTIF 4-AAACACCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.769378 0.226590 0.001929 0.002103
 0.938145 0.001929 0.001929 0.057997
 0.882071 0.001929 0.001929 0.114072
 0.002103 0.993865 0.001929 0.002103
 0.938145 0.001929 0.057823 0.002103
 0.002103 0.825641 0.001929 0.170327
 0.002103 0.899854 0.001929 0.096114
 0.994039 0.001929 0.001929 0.002103

MOTIF 5-TCCCACAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.001692 0.001551 0.001551 0.995205
 0.091753 0.905004 0.001551 0.001692
 0.001692 0.995065 0.001551 0.001692
 0.001692 0.995065 0.001551 0.001692
 0.769543 0.182256 0.046510 0.001692
 0.227939 0.768818 0.001551 0.001692
 0.995205 0.001551 0.001551 0.001692
 0.137220 0.136861 0.724227 0.001692

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SPI1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SPI1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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