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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.171 C 0.329 G 0.329 T 0.171 

MOTIF 1-RGCCCCGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 137 P= 1.5e-006
 0.504027 0.016153 0.452845 0.026976
 0.000249 0.020799 0.978703 0.000249
 0.020600 0.962599 0.000480 0.016321
 0.000249 0.836658 0.012743 0.150350
 0.166528 0.832743 0.000480 0.000249
 0.000249 0.999022 0.000480 0.000249
 0.000249 0.000480 0.999022 0.000249
 0.011585 0.977575 0.000480 0.010359

MOTIF 2-AGATCTCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.861505 0.082424 0.055406 0.000665
 0.000665 0.055363 0.943308 0.000665
 0.996767 0.001284 0.001284 0.000665
 0.000665 0.055406 0.001284 0.942645
 0.027683 0.916333 0.055319 0.000665
 0.000665 0.001284 0.001284 0.996767
 0.000665 0.997386 0.001284 0.000665
 0.000665 0.109485 0.889185 0.000665

MOTIF 3-GGCGGGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.015509 0.029945 0.939036 0.015509
 0.015509 0.029945 0.939036 0.015509
 0.015509 0.939036 0.029945 0.015509
 0.015509 0.029945 0.939036 0.015509
 0.015509 0.029945 0.939036 0.015509
 0.015509 0.029945 0.939036 0.015509
 0.924600 0.029945 0.029945 0.015509
 0.015509 0.939036 0.029945 0.015509

MOTIF 4-AGTGARTW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.961161 0.001648 0.036336 0.000854
 0.000854 0.001648 0.996644 0.000854
 0.000854 0.001648 0.001648 0.995849
 0.070511 0.001648 0.892299 0.035542
 0.926474 0.001648 0.001648 0.070230
 0.348967 0.001648 0.648530 0.000854
 0.000854 0.001648 0.001648 0.995849
 0.454043 0.106105 0.100727 0.339124

MOTIF 5-TCWCGWGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.000824 0.001591 0.001591 0.995994
 0.000824 0.980024 0.018329 0.000824
 0.362979 0.001591 0.137021 0.498409
 0.000824 0.996761 0.001591 0.000824
 0.000824 0.001591 0.996761 0.000824
 0.498409 0.137021 0.001591 0.362979
 0.000824 0.018329 0.980024 0.000824
 0.995994 0.001591 0.001591 0.000824

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SP1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SP1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	1.88 seconds
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