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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.214 C 0.285 G 0.285 T 0.214 

MOTIF 1-GCTRGGAB STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 145 P= 3.9e-001
 0.000301 0.000400 0.959926 0.039373
 0.040661 0.782700 0.034481 0.142157
 0.122576 0.030348 0.218034 0.629042
 0.385998 0.000400 0.613301 0.000301
 0.010022 0.000400 0.821572 0.168005
 0.033536 0.010122 0.727202 0.229140
 0.804374 0.124466 0.000400 0.070760
 0.127141 0.212746 0.331560 0.328552

MOTIF 2-ACCCCAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.992545 0.002710 0.002710 0.002036
 0.161618 0.635646 0.002710 0.200026
 0.002036 0.993219 0.002710 0.002036
 0.002036 0.993219 0.002710 0.002036
 0.002036 0.795653 0.068494 0.133817
 0.965312 0.002710 0.002710 0.029268
 0.992545 0.002710 0.002710 0.002036
 0.067820 0.015292 0.783071 0.133817

MOTIF 3-AAGACACB STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 5.0e-001
 0.593761 0.249202 0.001274 0.155762
 0.810548 0.001274 0.156279 0.031899
 0.000957 0.001274 0.996811 0.000957
 0.840732 0.001274 0.157036 0.000957
 0.000957 0.996811 0.001274 0.000957
 0.820688 0.115198 0.063157 0.000957
 0.000957 0.996811 0.001274 0.000957
 0.000957 0.280444 0.248903 0.469696

MOTIF 4-CAGCTTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 7.6e-001
 0.001226 0.939890 0.041255 0.017629
 0.916137 0.081005 0.001632 0.001226
 0.120478 0.167395 0.689552 0.022575
 0.017629 0.939890 0.001632 0.040849
 0.080727 0.001632 0.001632 0.916009
 0.080599 0.001632 0.001632 0.916137
 0.040849 0.832363 0.046061 0.080727
 0.160744 0.836398 0.001632 0.001226

MOTIF 5-AACCCTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.993001 0.002544 0.002544 0.001911
 0.993001 0.002544 0.002544 0.001911
 0.001911 0.931871 0.002544 0.063674
 0.250158 0.745387 0.002544 0.001911
 0.125635 0.808148 0.002544 0.063674
 0.001911 0.002544 0.002544 0.993001
 0.001911 0.745686 0.188729 0.063674
 0.063674 0.931871 0.002544 0.001911

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SNRNP70.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SNRNP70/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	3.32 seconds
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