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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-RTGAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 169 P= 7.3e-005
 0.490420 0.104479 0.377655 0.027447
 0.000362 0.000287 0.000287 0.999064
 0.000362 0.000287 0.957991 0.041359
 0.999064 0.000287 0.000287 0.000362
 0.000362 0.000287 0.998989 0.000362
 0.000362 0.000287 0.000287 0.999064
 0.000362 0.998989 0.000287 0.000362
 0.999064 0.000287 0.000287 0.000362

MOTIF 2-SAGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 126 P= 4.8e-003
 0.167327 0.458350 0.247658 0.126664
 0.729764 0.035952 0.000378 0.233906
 0.012322 0.000378 0.986824 0.000476
 0.992845 0.006301 0.000378 0.000476
 0.000476 0.000378 0.000378 0.998768
 0.922640 0.000378 0.000378 0.076604
 0.876445 0.000378 0.115755 0.007421
 0.000476 0.099063 0.821660 0.078801

MOTIF 3-CCCAGGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.3e-001
 0.061939 0.828437 0.078044 0.031580
 0.001221 0.966230 0.031328 0.001221
 0.001221 0.905512 0.092046 0.001221
 0.875210 0.061687 0.000969 0.062135
 0.013789 0.000969 0.923304 0.061939
 0.062037 0.031328 0.905415 0.001221
 0.702908 0.213481 0.031328 0.052283
 0.062037 0.000969 0.935773 0.001221

MOTIF 4-ACTTCCTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.934436 0.020109 0.020109 0.025345
 0.025345 0.929200 0.020109 0.025345
 0.025345 0.020109 0.020109 0.934436
 0.025345 0.020109 0.020109 0.934436
 0.025345 0.929200 0.020109 0.025345
 0.025345 0.929200 0.020109 0.025345
 0.025345 0.020109 0.020109 0.934436
 0.025345 0.929200 0.020109 0.025345

MOTIF 5-GTAAACAW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 7.6e-001
 0.001348 0.001070 0.996234 0.001348
 0.001348 0.316965 0.001070 0.680617
 0.996512 0.001070 0.001070 0.001348
 0.662664 0.182770 0.001070 0.153496
 0.895947 0.101635 0.001070 0.001348
 0.001348 0.782594 0.001070 0.214988
 0.949114 0.001070 0.048468 0.001348
 0.480638 0.001070 0.001070 0.517222

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMARCE1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMARCE1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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