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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-RTGAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 147 P= 1.7e-004
 0.495139 0.120735 0.355157 0.028969
 0.026172 0.000332 0.000332 0.973163
 0.000433 0.000332 0.954166 0.045069
 0.998902 0.000332 0.000332 0.000433
 0.000433 0.000332 0.960498 0.038737
 0.000433 0.000332 0.000332 0.998902
 0.030569 0.968666 0.000332 0.000433
 0.998902 0.000332 0.000332 0.000433

MOTIF 2-RAGATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 97 P= 9.0e-003
 0.257743 0.098037 0.440577 0.203643
 0.927466 0.043020 0.000444 0.029070
 0.000579 0.000444 0.984222 0.014755
 0.998533 0.000444 0.000444 0.000579
 0.000579 0.000444 0.000444 0.998533
 0.984356 0.000444 0.000444 0.014755
 0.907328 0.014621 0.077472 0.000579
 0.200182 0.146199 0.613165 0.040454

MOTIF 3-CGCCCCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.003101 0.991419 0.002380 0.003101
 0.003101 0.002380 0.991419 0.003101
 0.003101 0.991419 0.002380 0.003101
 0.079077 0.839466 0.078356 0.003101
 0.155298 0.687269 0.078356 0.079077
 0.003101 0.991419 0.002380 0.003101
 0.079199 0.915320 0.002380 0.003101
 0.763966 0.002380 0.154577 0.079077

MOTIF 4-AAGAGGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.934809 0.019736 0.019736 0.025718
 0.934809 0.019736 0.019736 0.025718
 0.025718 0.019736 0.928827 0.025718
 0.934809 0.019736 0.019736 0.025718
 0.025718 0.019736 0.928827 0.025718
 0.025718 0.019736 0.928827 0.025718
 0.934809 0.019736 0.019736 0.025718
 0.934809 0.019736 0.019736 0.025718

MOTIF 5-CTGCAATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 6.7e-001
 0.001402 0.927402 0.035435 0.035761
 0.035761 0.001076 0.001076 0.962087
 0.001402 0.001076 0.996119 0.001402
 0.035761 0.664988 0.069904 0.229348
 0.893038 0.001076 0.001076 0.104810
 0.927618 0.001076 0.069904 0.001402
 0.111813 0.104484 0.069904 0.713799
 0.019915 0.924523 0.001076 0.054486

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMARCC2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMARCC2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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