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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-AGTGACTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 3.0e-001
 0.926568 0.001003 0.070914 0.001515
 0.071426 0.070914 0.751109 0.106551
 0.001515 0.001003 0.035959 0.961524
 0.001515 0.001003 0.961068 0.036414
 0.891443 0.001003 0.001003 0.106551
 0.015962 0.946621 0.001003 0.036414
 0.001515 0.070914 0.001003 0.926568
 0.071426 0.714960 0.001003 0.212611

MOTIF 2-TMKATMKA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 6.4e-001
 0.083783 0.071815 0.000555 0.843847
 0.593777 0.332591 0.000555 0.073077
 0.144455 0.164824 0.344614 0.346107
 0.965099 0.000555 0.033509 0.000837
 0.000837 0.033509 0.000555 0.965099
 0.346107 0.344614 0.164824 0.144455
 0.073077 0.000555 0.332591 0.593777
 0.843847 0.000555 0.071815 0.083783

MOTIF 3-AAATGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.3e-001
 0.812153 0.184401 0.001373 0.002073
 0.832083 0.049147 0.116697 0.002073
 0.708076 0.001373 0.240704 0.049847
 0.002073 0.001373 0.001373 0.995181
 0.002073 0.001373 0.994481 0.002073
 0.002073 0.994481 0.001373 0.002073
 0.797829 0.145156 0.001373 0.055642
 0.831929 0.116851 0.001373 0.049847

MOTIF 4-GAAATCAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 9.5e-001
 0.022699 0.035062 0.899809 0.042430
 0.778256 0.017751 0.017751 0.186241
 0.662152 0.105793 0.086966 0.145088
 0.897642 0.000496 0.049292 0.052570
 0.060909 0.086883 0.000496 0.851712
 0.035315 0.863779 0.024894 0.076012
 0.794196 0.022877 0.104082 0.078844
 0.104335 0.046773 0.104586 0.744305

MOTIF 5-ACAAGAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.800114 0.058450 0.025153 0.116283
 0.002466 0.993436 0.001633 0.002466
 0.880634 0.001633 0.058450 0.059283
 0.880268 0.001633 0.115634 0.002466
 0.002466 0.001633 0.936619 0.059283
 0.823817 0.115267 0.058450 0.002466
 0.059283 0.001633 0.936619 0.002466
 0.002466 0.936619 0.001633 0.059283

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMARCB1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMARCB1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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