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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-CAAAGGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 5.5e-002
 0.000881 0.997286 0.000952 0.000881
 0.986694 0.000952 0.011473 0.000881
 0.997214 0.000952 0.000952 0.000881
 0.997214 0.000952 0.000952 0.000881
 0.000881 0.000952 0.997286 0.000881
 0.026296 0.000952 0.971871 0.000881
 0.000881 0.869180 0.000952 0.128987
 0.000881 0.997286 0.000952 0.000881

MOTIF 2-CCTCCCRA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.4e-001
 0.001347 0.995851 0.001456 0.001347
 0.001347 0.995851 0.001456 0.001347
 0.001347 0.001456 0.001456 0.995742
 0.040199 0.956999 0.001456 0.001347
 0.001347 0.995851 0.001456 0.001347
 0.001347 0.995851 0.001456 0.001347
 0.641188 0.001456 0.356009 0.001347
 0.995742 0.001456 0.001456 0.001347

MOTIF 3-CAAGCGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.001134 0.963782 0.033949 0.001134
 0.996414 0.001226 0.001226 0.001134
 0.930968 0.033949 0.033949 0.001134
 0.001134 0.001226 0.996505 0.001134
 0.033857 0.700301 0.066777 0.199065
 0.165808 0.106381 0.726676 0.001134
 0.996414 0.001226 0.001226 0.001134
 0.001134 0.033949 0.033949 0.930968

MOTIF 4-CTGCCTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 98 P= 6.5e-001
 0.002575 0.897198 0.050142 0.050085
 0.000706 0.062225 0.000763 0.936306
 0.021061 0.000763 0.916206 0.061970
 0.000706 0.925899 0.000763 0.072633
 0.000706 0.953156 0.041539 0.004599
 0.044547 0.092618 0.000763 0.862072
 0.000706 0.956983 0.000763 0.041548
 0.915952 0.000763 0.082580 0.000706

MOTIF 5-CCAGCTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 8.3e-001
 0.000744 0.933295 0.022252 0.043709
 0.000744 0.997709 0.000804 0.000744
 0.976201 0.022252 0.000804 0.000744
 0.000744 0.043770 0.933295 0.022192
 0.022192 0.976261 0.000804 0.000744
 0.000744 0.178137 0.022252 0.798867
 0.933096 0.000804 0.000804 0.065296
 0.130903 0.846102 0.000804 0.022192

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMARCA5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMARCA5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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