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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-CACGTGGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 1.2e-001
 0.030338 0.967547 0.001102 0.001013
 0.852725 0.001102 0.145159 0.001013
 0.001013 0.967547 0.001102 0.030338
 0.130988 0.059846 0.808152 0.001013
 0.243198 0.030427 0.001102 0.725273
 0.001013 0.001102 0.996871 0.001013
 0.001013 0.162302 0.776738 0.059947
 0.024321 0.225036 0.001102 0.749540

MOTIF 2-GTGACTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 2.1e-001
 0.158374 0.116971 0.719777 0.004878
 0.000746 0.000812 0.065828 0.932614
 0.065553 0.011613 0.857211 0.065623
 0.951466 0.009754 0.038033 0.000746
 0.002730 0.905810 0.090714 0.000746
 0.024969 0.022414 0.022414 0.930203
 0.130955 0.802680 0.000812 0.065553
 0.954425 0.022414 0.022414 0.000746

MOTIF 3-AGATAAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 3.0e-001
 0.964638 0.001198 0.001198 0.032967
 0.001101 0.001198 0.964734 0.032967
 0.900700 0.065135 0.033064 0.001101
 0.001101 0.001198 0.001198 0.996504
 0.996504 0.001198 0.001198 0.001101
 0.868732 0.033064 0.097104 0.001101
 0.001101 0.001198 0.900694 0.097007
 0.184287 0.097104 0.653674 0.064936

MOTIF 4-AACGAARA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.993054 0.002379 0.002379 0.002187
 0.993054 0.002379 0.002379 0.002187
 0.002187 0.993246 0.002379 0.002187
 0.002187 0.002379 0.993246 0.002187
 0.929749 0.002379 0.002379 0.065493
 0.739630 0.065684 0.002379 0.192307
 0.612611 0.002379 0.319518 0.065493
 0.726318 0.002379 0.002379 0.268924

MOTIF 5-CTCAGGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.3e-001
 0.100867 0.647752 0.249672 0.001710
 0.001710 0.001860 0.001860 0.994569
 0.051209 0.846223 0.001860 0.100707
 0.846073 0.001860 0.150356 0.001710
 0.001710 0.001860 0.994719 0.001710
 0.001710 0.001860 0.747067 0.249362
 0.994569 0.001860 0.001860 0.001710
 0.001710 0.001860 0.945221 0.051209

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMARCA4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMARCA4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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