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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.23 C 0.27 G 0.27 T 0.23 

MOTIF 1-CCACCTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 9.5e-002
 0.063678 0.839425 0.069220 0.027676
 0.054465 0.878937 0.027833 0.038766
 0.885624 0.001044 0.041367 0.071965
 0.000888 0.990839 0.002261 0.006012
 0.015322 0.810565 0.108241 0.065872
 0.004279 0.027833 0.085529 0.882360
 0.006012 0.928884 0.049782 0.015322
 0.081643 0.784366 0.081452 0.052539

MOTIF 2-GGAATAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.134351 0.068547 0.728939 0.068163
 0.068163 0.134735 0.728939 0.068163
 0.992669 0.002572 0.002572 0.002187
 0.860506 0.002572 0.134735 0.002187
 0.002187 0.002572 0.002572 0.992669
 0.992669 0.002572 0.002572 0.002187
 0.926694 0.068547 0.002572 0.002187
 0.068163 0.068547 0.861103 0.002187

MOTIF 3-AAGAAAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.0e-001
 0.991194 0.003089 0.003089 0.002627
 0.991194 0.003089 0.003089 0.002627
 0.002627 0.003089 0.912409 0.081874
 0.911947 0.003089 0.003089 0.081874
 0.911947 0.003089 0.003089 0.081874
 0.798955 0.003089 0.003089 0.194866
 0.911947 0.082336 0.003089 0.002627
 0.002627 0.003089 0.991656 0.002627

MOTIF 4-AGTAGAGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.847386 0.043369 0.043369 0.065875
 0.085003 0.043369 0.828502 0.043126
 0.001384 0.001627 0.001627 0.995362
 0.883411 0.001627 0.071835 0.043126
 0.127014 0.018907 0.769076 0.085003
 0.995362 0.001627 0.001627 0.001384
 0.048189 0.001627 0.948800 0.001384
 0.043193 0.043369 0.912053 0.001384

MOTIF 5-CCAGCTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.002331 0.992596 0.002741 0.002331
 0.143198 0.781409 0.002741 0.072652
 0.921866 0.073062 0.002741 0.002331
 0.143198 0.002741 0.851729 0.002331
 0.002331 0.992596 0.002741 0.002331
 0.002331 0.002741 0.073175 0.921753
 0.992186 0.002741 0.002741 0.002331
 0.002331 0.992596 0.002741 0.002331

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMAD5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMAD5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.74 seconds
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