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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-GTGCCAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 165 P= 5.6e-005
 0.068953 0.082373 0.702338 0.146336
 0.058243 0.028843 0.000332 0.912582
 0.000354 0.000332 0.998961 0.000354
 0.000354 0.998961 0.000332 0.000354
 0.000354 0.998961 0.000332 0.000354
 0.998983 0.000332 0.000332 0.000354
 0.839010 0.000332 0.160305 0.000354
 0.180328 0.204640 0.566774 0.048259

MOTIF 2-ATTACATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 3.0e-001
 0.591056 0.073259 0.228217 0.107468
 0.027876 0.000840 0.145445 0.825838
 0.000896 0.000840 0.083273 0.914991
 0.925083 0.000840 0.073182 0.000896
 0.000896 0.949167 0.000840 0.049097
 0.908829 0.041311 0.048964 0.000896
 0.051328 0.024902 0.000840 0.922930
 0.925160 0.000840 0.000840 0.073160

MOTIF 3-CCTGGCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.002093 0.993850 0.001964 0.002093
 0.002093 0.824851 0.170962 0.002093
 0.002093 0.001964 0.194154 0.801789
 0.114578 0.001964 0.881365 0.002093
 0.002093 0.001964 0.993850 0.002093
 0.002093 0.993850 0.001964 0.002093
 0.002093 0.001964 0.001964 0.993979
 0.002093 0.993850 0.001964 0.002093

MOTIF 4-AAATGTTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.932545 0.022000 0.022000 0.023455
 0.932545 0.022000 0.022000 0.023455
 0.932545 0.022000 0.022000 0.023455
 0.023455 0.022000 0.022000 0.932545
 0.023455 0.022000 0.931091 0.023455
 0.023455 0.022000 0.022000 0.932545
 0.023455 0.022000 0.022000 0.932545
 0.023455 0.931091 0.022000 0.023455

MOTIF 5-YTCACTGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.115472 0.514128 0.001979 0.368421
 0.002110 0.001979 0.058660 0.937251
 0.058791 0.937120 0.001979 0.002110
 0.993932 0.001979 0.001979 0.002110
 0.002110 0.993802 0.001979 0.002110
 0.002110 0.115341 0.001979 0.880570
 0.002110 0.001979 0.856793 0.139119
 0.993932 0.001979 0.001979 0.002110

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SMAD1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SMAD1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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