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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.213 C 0.287 G 0.287 T 0.213 

MOTIF 1-GAGAAACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001
 0.019336 0.026118 0.935209 0.019336
 0.928427 0.026118 0.026118 0.019336
 0.019336 0.026118 0.935209 0.019336
 0.928427 0.026118 0.026118 0.019336
 0.928427 0.026118 0.026118 0.019336
 0.928427 0.026118 0.026118 0.019336
 0.019336 0.935209 0.026118 0.019336
 0.019336 0.935209 0.026118 0.019336

MOTIF 2-ATGYAATS STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.996648 0.001223 0.001223 0.000906
 0.000906 0.001223 0.001223 0.996648
 0.208939 0.001223 0.788932 0.000906
 0.000906 0.356921 0.001223 0.640950
 0.996648 0.001223 0.001223 0.000906
 0.908106 0.001223 0.001223 0.089447
 0.000906 0.089860 0.297603 0.611632
 0.059933 0.475452 0.445842 0.018773

MOTIF 3-ACATTCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.920328 0.039258 0.039258 0.001157
 0.076668 0.920612 0.001562 0.001157
 0.926814 0.017167 0.039258 0.016761
 0.001157 0.001562 0.001562 0.995718
 0.001157 0.001562 0.039258 0.958023
 0.076668 0.807405 0.077074 0.038852
 0.076668 0.920612 0.001562 0.001157
 0.866581 0.093004 0.039258 0.001157

MOTIF 4-GTCTAGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.019336 0.026118 0.935209 0.019336
 0.019336 0.026118 0.026118 0.928427
 0.019336 0.935209 0.026118 0.019336
 0.019336 0.026118 0.026118 0.928427
 0.928427 0.026118 0.026118 0.019336
 0.019336 0.026118 0.935209 0.019336
 0.928427 0.026118 0.026118 0.019336
 0.019336 0.935209 0.026118 0.019336

MOTIF 5-GTCACCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.002017 0.002725 0.993241 0.002017
 0.002017 0.002725 0.002725 0.992533
 0.002017 0.993241 0.002725 0.002017
 0.926797 0.002725 0.068461 0.002017
 0.067753 0.927505 0.002725 0.002017
 0.002017 0.927505 0.068461 0.002017
 0.067753 0.597550 0.068461 0.266236
 0.992533 0.002725 0.002725 0.002017

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SKIL.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SKIL/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	3.90 seconds
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