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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.181 C 0.319 G 0.319 T 0.181 

MOTIF 1-GGTGCTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 2.0e-003
 0.000619 0.001090 0.997673 0.000619
 0.000619 0.001090 0.997673 0.000619
 0.000619 0.001090 0.001090 0.997202
 0.048142 0.001090 0.950150 0.000619
 0.024342 0.973949 0.001090 0.000619
 0.000619 0.001090 0.001090 0.997202
 0.024304 0.001090 0.950302 0.024304
 0.997202 0.001090 0.001090 0.000619

MOTIF 2-CCMCGCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 1.2e-001
 0.000554 0.997917 0.000975 0.000554
 0.000554 0.976723 0.022169 0.000554
 0.439788 0.558683 0.000975 0.000554
 0.000554 0.997917 0.000975 0.000554
 0.000554 0.074755 0.924137 0.000554
 0.051784 0.946687 0.000975 0.000554
 0.000554 0.997917 0.000975 0.000554
 0.000554 0.833536 0.000975 0.164935

MOTIF 3-GGACAGCR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 76 P= 2.3e-001
 0.025726 0.000999 0.755600 0.217675
 0.017339 0.000999 0.981094 0.000567
 0.997435 0.000999 0.000999 0.000567
 0.022279 0.954443 0.022711 0.000567
 0.932300 0.022711 0.000999 0.043991
 0.009555 0.000999 0.967167 0.022279
 0.015042 0.961645 0.022746 0.000567
 0.463953 0.000999 0.316613 0.218435

MOTIF 4-MCASSTGK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 133 P= 5.0e-001
 0.258679 0.427526 0.138060 0.175735
 0.000379 0.998574 0.000667 0.000379
 0.998286 0.000667 0.000667 0.000379
 0.036682 0.391367 0.571572 0.000379
 0.000379 0.571572 0.391367 0.036682
 0.000379 0.000667 0.000667 0.998286
 0.000379 0.000667 0.998574 0.000379
 0.175735 0.138060 0.427526 0.258679

MOTIF 5-CCTCCTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 6.7e-001
 0.030567 0.965242 0.002673 0.001518
 0.001518 0.877104 0.002673 0.118705
 0.001518 0.002673 0.002673 0.993136
 0.001518 0.877721 0.002673 0.118088
 0.059616 0.878096 0.002673 0.059616
 0.001518 0.002673 0.002673 0.993136
 0.012630 0.871161 0.002673 0.113536
 0.001518 0.936193 0.060771 0.001518

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SIN3A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SIN3A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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