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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.174 C 0.326 G 0.326 T 0.174 

MOTIF 1-AGCTGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.991049 0.003533 0.003533 0.001886
 0.001886 0.034627 0.961602 0.001886
 0.076998 0.767358 0.078646 0.076998
 0.001886 0.003533 0.154000 0.840582
 0.001886 0.003533 0.992696 0.001886
 0.001886 0.003533 0.003533 0.991049
 0.152353 0.842229 0.003533 0.001886
 0.991049 0.003533 0.003533 0.001886

MOTIF 2-AGGGAGGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 6.7e-001
 0.957586 0.040054 0.001539 0.000821
 0.033534 0.019165 0.913767 0.033534
 0.063895 0.019165 0.902577 0.014363
 0.099276 0.133024 0.701347 0.066352
 0.848485 0.149155 0.001539 0.000821
 0.040499 0.001539 0.957141 0.000821
 0.014363 0.106661 0.845441 0.033534
 0.084919 0.884205 0.016512 0.014363

MOTIF 3-ACGTGGGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.0e-001
 0.866961 0.057615 0.007941 0.067483
 0.067590 0.930006 0.001567 0.000837
 0.067483 0.034890 0.830037 0.067590
 0.034160 0.001567 0.034890 0.929383
 0.067483 0.101644 0.729960 0.100913
 0.034160 0.082008 0.876622 0.007210
 0.047954 0.191122 0.726764 0.034160
 0.000837 0.034890 0.057615 0.906658

MOTIF 4-AATGAATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.805397 0.049349 0.144070 0.001183
 0.710980 0.285620 0.002217 0.001183
 0.001183 0.002217 0.002217 0.994383
 0.048316 0.049425 0.901076 0.001183
 0.994383 0.002217 0.002217 0.001183
 0.833474 0.096482 0.068861 0.001183
 0.001183 0.002217 0.002217 0.994383
 0.001183 0.285164 0.712470 0.001183

MOTIF 5-CAAACCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001243 0.945655 0.002329 0.050772
 0.903987 0.092440 0.002329 0.001243
 0.944569 0.002329 0.002329 0.050772
 0.944569 0.002329 0.002329 0.050772
 0.100460 0.647846 0.151394 0.100300
 0.050772 0.886654 0.061331 0.001243
 0.149988 0.697694 0.151074 0.001243
 0.994098 0.002329 0.002329 0.001243

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SAP30.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SAP30/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	3.52 seconds
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