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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.15 C 0.35 G 0.35 T 0.15 

MOTIF 1-CMCGCGKG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 137 P= 4.4e-002
 0.014579 0.929070 0.041849 0.014502
 0.521281 0.336863 0.086561 0.055296
 0.020643 0.895284 0.018794 0.065279
 0.000886 0.026202 0.934628 0.038284
 0.038284 0.934628 0.026202 0.000886
 0.065279 0.018794 0.895284 0.020643
 0.055296 0.086561 0.336863 0.521281
 0.014502 0.041849 0.929070 0.014579

MOTIF 2-CGTGGAAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 1.2e-001
 0.027528 0.970528 0.001362 0.000582
 0.000582 0.035568 0.952114 0.011736
 0.099797 0.001362 0.173567 0.725274
 0.000582 0.028309 0.916636 0.054474
 0.032682 0.012517 0.954219 0.000582
 0.681244 0.001362 0.228713 0.088680
 0.886220 0.104577 0.001362 0.007841
 0.434545 0.001362 0.563512 0.000582

MOTIF 3-CAACCCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.000872 0.928224 0.070031 0.000872
 0.914196 0.002043 0.002043 0.081717
 0.755568 0.002043 0.086303 0.156085
 0.000872 0.955790 0.042466 0.000872
 0.000872 0.817659 0.042466 0.139002
 0.000872 0.915367 0.042466 0.041295
 0.000872 0.874945 0.042466 0.081717
 0.916105 0.023823 0.018777 0.041295

MOTIF 4-ACCCAGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.994211 0.002385 0.002385 0.001018
 0.095535 0.806698 0.049567 0.048201
 0.001018 0.995578 0.002385 0.001018
 0.001018 0.995578 0.002385 0.001018
 0.804950 0.049643 0.144388 0.001018
 0.001018 0.238608 0.759356 0.001018
 0.143021 0.002385 0.853575 0.001018
 0.048201 0.948396 0.002385 0.001018

MOTIF 5-GAGCWGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 9.7e-001
 0.152905 0.123553 0.722886 0.000657
 0.996267 0.001538 0.001538 0.000657
 0.092045 0.062398 0.844900 0.000657
 0.092045 0.905760 0.001538 0.000657
 0.555809 0.075356 0.001538 0.367297
 0.000657 0.001538 0.997148 0.000657
 0.135335 0.771082 0.092926 0.000657
 0.840131 0.093123 0.001538 0.065208

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/SAFB.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_SAFB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.61 seconds
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