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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.261 C 0.239 G 0.239 T 0.261 

MOTIF 1-CCTCCCTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.5e-002
 0.001359 0.908335 0.088948 0.001359
 0.182235 0.597895 0.037401 0.182468
 0.037511 0.001249 0.001249 0.959991
 0.145967 0.815273 0.037401 0.001359
 0.037511 0.959881 0.001249 0.001359
 0.001359 0.887577 0.037401 0.073663
 0.293045 0.001249 0.001249 0.704457
 0.996143 0.001249 0.001249 0.001359

MOTIF 2-AACGAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 5.0e-001
 0.974992 0.000781 0.023378 0.000849
 0.997589 0.000781 0.000781 0.000849
 0.000849 0.997521 0.000781 0.000849
 0.000849 0.102192 0.823779 0.073180
 0.974992 0.000781 0.023378 0.000849
 0.997589 0.000781 0.000781 0.000849
 0.670728 0.000781 0.015845 0.312646
 0.187209 0.048715 0.162867 0.601209

MOTIF 3-ACCTCCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 6.5e-001
 0.934387 0.030876 0.003772 0.030966
 0.001122 0.890831 0.047140 0.060906
 0.030966 0.755931 0.001031 0.212071
 0.030966 0.120988 0.060720 0.787326
 0.060810 0.934296 0.003772 0.001122
 0.001122 0.966881 0.030876 0.001122
 0.030966 0.073429 0.090853 0.804752
 0.060810 0.864639 0.001031 0.073519

MOTIF 4-CTTATCTK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 7.0e-001
 0.106583 0.602799 0.289716 0.000902
 0.000902 0.048809 0.000829 0.949461
 0.048881 0.000829 0.000829 0.949461
 0.997441 0.000829 0.000829 0.000902
 0.060953 0.121010 0.000829 0.817207
 0.000902 0.997368 0.000829 0.000902
 0.113453 0.024819 0.048809 0.812920
 0.000902 0.197499 0.284184 0.517415

MOTIF 5-GCCACWGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.0e-001
 0.044954 0.001497 0.951920 0.001628
 0.001628 0.951920 0.001497 0.044954
 0.001628 0.995246 0.001497 0.001628
 0.908656 0.001497 0.088219 0.001628
 0.001628 0.995246 0.001497 0.001628
 0.472938 0.044823 0.044823 0.437416
 0.001628 0.044823 0.803588 0.149961
 0.001628 0.977311 0.001497 0.019564

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RNF2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RNF2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.22 seconds
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