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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.227 G 0.227 T 0.273 

MOTIF 1-CTAGCAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 194 P= 8.1e-007
 0.149112 0.748280 0.000252 0.102356
 0.000303 0.215651 0.000252 0.783794
 0.764384 0.000252 0.235061 0.000303
 0.092308 0.000252 0.907137 0.000303
 0.078886 0.647334 0.003436 0.270344
 0.811287 0.000252 0.188159 0.000303
 0.991502 0.007943 0.000252 0.000303
 0.000303 0.999142 0.000252 0.000303

MOTIF 2-CCAATMAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 1.2e-001
 0.021973 0.934220 0.021833 0.021973
 0.021973 0.955361 0.000692 0.021973
 0.976642 0.021833 0.000692 0.000833
 0.955467 0.000692 0.021833 0.022007
 0.000833 0.021833 0.021833 0.955501
 0.592510 0.349906 0.014402 0.043182
 0.955501 0.021833 0.021833 0.000833
 0.059644 0.000692 0.938367 0.001297

MOTIF 3-AAGAAGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.995981 0.001255 0.001255 0.001509
 0.733913 0.001255 0.225003 0.039829
 0.001509 0.001255 0.995727 0.001509
 0.880898 0.001255 0.078018 0.039829
 0.819411 0.001255 0.020415 0.158919
 0.001509 0.001255 0.995727 0.001509
 0.842454 0.001255 0.154782 0.001509
 0.001509 0.001255 0.001255 0.995981

MOTIF 4-GCGTCATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 3.0e-001
 0.056737 0.000911 0.718242 0.224110
 0.146229 0.572024 0.000911 0.280837
 0.098808 0.028732 0.843544 0.028916
 0.028916 0.028732 0.000911 0.941441
 0.001096 0.996897 0.000911 0.001096
 0.969261 0.028732 0.000911 0.001096
 0.001096 0.168015 0.000911 0.829979
 0.001096 0.885525 0.084463 0.028916

MOTIF 5-GAAATGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 5.0e-001
 0.000891 0.000741 0.974862 0.023506
 0.861642 0.023356 0.114110 0.000891
 0.884404 0.023356 0.091349 0.000891
 0.942962 0.046045 0.010103 0.000891
 0.000891 0.000741 0.091642 0.906727
 0.055752 0.046045 0.874696 0.023506
 0.000891 0.770665 0.046045 0.182400
 0.930126 0.058881 0.010103 0.000891

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RFX5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RFX5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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