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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.224 C 0.276 G 0.276 T 0.224 

MOTIF 1-GCTGTCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 233 P= 4.0e-007
 0.050351 0.044331 0.860281 0.045038
 0.000241 0.982998 0.009053 0.007708
 0.000241 0.000297 0.000297 0.999164
 0.060658 0.062053 0.875486 0.001803
 0.013107 0.010338 0.005572 0.970983
 0.000241 0.985635 0.013882 0.000241
 0.003332 0.993038 0.003388 0.000241
 0.804114 0.040223 0.080573 0.075090

MOTIF 2-GGTGCTGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 168 P= 4.8e-003
 0.094741 0.009989 0.878800 0.016469
 0.000311 0.000382 0.998996 0.000311
 0.000311 0.000382 0.000382 0.998925
 0.167495 0.111849 0.670263 0.050393
 0.000311 0.998996 0.000382 0.000311
 0.000311 0.000382 0.000382 0.998925
 0.029318 0.000382 0.969989 0.000311
 0.879961 0.077264 0.042464 0.000311

MOTIF 3-CCCTCCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 5.5e-002
 0.018134 0.955048 0.025791 0.001027
 0.001027 0.961081 0.036866 0.001027
 0.003942 0.928101 0.054667 0.013290
 0.115647 0.005952 0.133161 0.745240
 0.032777 0.817598 0.064355 0.085270
 0.050081 0.883922 0.064970 0.001027
 0.016902 0.886216 0.001264 0.095618
 0.001027 0.996683 0.001264 0.001027

MOTIF 4-AAACATGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.849021 0.074334 0.074334 0.002311
 0.777303 0.002846 0.074334 0.145518
 0.962404 0.002846 0.032439 0.002311
 0.002311 0.921044 0.074334 0.002311
 0.920509 0.002846 0.002846 0.073800
 0.002311 0.002846 0.002846 0.991998
 0.002311 0.002846 0.962938 0.031905
 0.002311 0.705888 0.146283 0.145518

MOTIF 5-AGGGCAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.893550 0.001582 0.023859 0.081010
 0.041019 0.001582 0.956115 0.001285
 0.120872 0.001582 0.836527 0.041019
 0.134863 0.201540 0.662312 0.001285
 0.001285 0.995849 0.001582 0.001285
 0.915956 0.001582 0.001582 0.080881
 0.955818 0.001582 0.001582 0.041019
 0.001285 0.001582 0.995849 0.001285

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/REST.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_REST/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	1.95 seconds
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