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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-AAACAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.7e-001
 0.896569 0.001512 0.100488 0.001432
 0.858381 0.001512 0.001512 0.138595
 0.995545 0.001512 0.001512 0.001432
 0.001432 0.831630 0.001512 0.165426
 0.790749 0.165506 0.042313 0.001432
 0.995545 0.001512 0.001512 0.001432
 0.995545 0.001512 0.001512 0.001432
 0.913812 0.001512 0.083245 0.001432

MOTIF 2-ATGGAGTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.995400 0.001561 0.001561 0.001478
 0.001478 0.001561 0.001561 0.995400
 0.001478 0.170088 0.826955 0.001478
 0.001478 0.001561 0.995483 0.001478
 0.882405 0.001561 0.001561 0.114474
 0.128281 0.001561 0.826548 0.043610
 0.114474 0.001561 0.001561 0.882405
 0.043610 0.953351 0.001561 0.001478

MOTIF 3-GGGATTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.115319 0.002096 0.880600 0.001985
 0.001985 0.002096 0.880600 0.115319
 0.025406 0.002096 0.970513 0.001985
 0.937247 0.002096 0.058672 0.001985
 0.001985 0.229497 0.002096 0.766422
 0.001985 0.002096 0.002096 0.993823
 0.993823 0.002096 0.002096 0.001985
 0.001985 0.993934 0.002096 0.001985

MOTIF 4-GCCYRGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.001815 0.001917 0.994453 0.001815
 0.001815 0.994453 0.001917 0.001815
 0.001815 0.916849 0.079520 0.001815
 0.001815 0.342095 0.183958 0.472132
 0.472132 0.183958 0.342095 0.001815
 0.001815 0.079520 0.916849 0.001815
 0.001815 0.001917 0.994453 0.001815
 0.001815 0.994453 0.001917 0.001815

MOTIF 5-ACAGTGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 9.5e-001
 0.915644 0.001002 0.082405 0.000949
 0.000949 0.920845 0.050211 0.027996
 0.970000 0.028049 0.001002 0.000949
 0.027996 0.055183 0.888825 0.027996
 0.000949 0.001002 0.001002 0.997047
 0.109399 0.046494 0.843159 0.000949
 0.855587 0.042789 0.046494 0.055130
 0.109661 0.698447 0.136761 0.055130

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RELA.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RELA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.78 seconds
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