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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.179 C 0.321 G 0.321 T 0.179 

MOTIF 1-CCGAGTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.001694 0.862085 0.003041 0.133181
 0.001694 0.993571 0.003041 0.001694
 0.001694 0.003041 0.993571 0.001694
 0.992225 0.003041 0.003041 0.001694
 0.001694 0.003041 0.993571 0.001694
 0.001694 0.003041 0.003041 0.992225
 0.001694 0.796023 0.003041 0.199242
 0.001694 0.796023 0.200589 0.001694

MOTIF 2-CAGCCCCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 3.8e-001
 0.063000 0.919122 0.001448 0.016431
 0.929801 0.001448 0.001448 0.067303
 0.000807 0.001448 0.931445 0.066301
 0.021639 0.950942 0.026612 0.000807
 0.143033 0.718481 0.043606 0.094880
 0.000807 0.839512 0.001448 0.158234
 0.121655 0.876091 0.001448 0.000807
 0.209860 0.001448 0.756486 0.032207

MOTIF 3-AAGACGTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.989376 0.004154 0.004154 0.002315
 0.899696 0.004154 0.093835 0.002315
 0.002315 0.004154 0.901536 0.091995
 0.989376 0.004154 0.004154 0.002315
 0.091995 0.722175 0.093835 0.091995
 0.002315 0.183804 0.811567 0.002315
 0.002315 0.183804 0.004154 0.809727
 0.091995 0.004154 0.004154 0.899696

MOTIF 4-CCTCCTCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.000982 0.996275 0.001762 0.000982
 0.000982 0.599509 0.131590 0.267920
 0.131261 0.001762 0.001762 0.865216
 0.000982 0.881821 0.001762 0.115435
 0.000982 0.942504 0.055533 0.000982
 0.000982 0.001762 0.001762 0.995495
 0.207235 0.790021 0.001762 0.000982
 0.245634 0.001762 0.751623 0.000982

MOTIF 5-CAGGCCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.016264 0.938282 0.029191 0.016264
 0.925355 0.029191 0.029191 0.016264
 0.016264 0.029191 0.938282 0.016264
 0.016264 0.029191 0.938282 0.016264
 0.016264 0.938282 0.029191 0.016264
 0.016264 0.938282 0.029191 0.016264
 0.016264 0.938282 0.029191 0.016264
 0.925355 0.029191 0.029191 0.016264

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBM34.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBM34/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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