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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.181 C 0.319 G 0.319 T 0.181 

MOTIF 1-CCCCAGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 3.6e-001
 0.019218 0.875989 0.018381 0.086412
 0.024465 0.909085 0.042853 0.023596
 0.038176 0.905190 0.002943 0.053691
 0.124180 0.867735 0.007285 0.000801
 0.780765 0.100055 0.111992 0.007189
 0.075264 0.020764 0.898612 0.005360
 0.006672 0.967794 0.016464 0.009070
 0.013956 0.929259 0.032110 0.024675

MOTIF 2-GGCTGCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.001095 0.128858 0.868953 0.001095
 0.085301 0.001933 0.911672 0.001095
 0.043063 0.953910 0.001933 0.001095
 0.001095 0.001933 0.001933 0.995040
 0.001095 0.001933 0.995878 0.001095
 0.001095 0.869568 0.001933 0.127404
 0.995040 0.001933 0.001933 0.001095
 0.102901 0.001933 0.894071 0.001095

MOTIF 3-CGTGTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 8.8e-001
 0.000754 0.997161 0.001331 0.000754
 0.000754 0.001331 0.968255 0.029660
 0.000754 0.013297 0.001331 0.984618
 0.087658 0.059143 0.794634 0.058566
 0.122232 0.001331 0.263457 0.612979
 0.000754 0.245265 0.753227 0.000754
 0.012720 0.944323 0.013297 0.029660
 0.673381 0.204279 0.059329 0.063011

MOTIF 4-AGAAGGTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 8.8e-001
 0.915076 0.079446 0.003497 0.001981
 0.001981 0.003497 0.992540 0.001981
 0.762934 0.003497 0.003497 0.230071
 0.991024 0.003497 0.003497 0.001981
 0.077929 0.079446 0.840644 0.001981
 0.001981 0.003497 0.688012 0.306509
 0.001981 0.003497 0.003497 0.991024
 0.001981 0.079446 0.916592 0.001981

MOTIF 5-ACGTCGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.941621 0.002404 0.054613 0.001362
 0.053570 0.942664 0.002404 0.001362
 0.105779 0.054613 0.838246 0.001362
 0.001362 0.054613 0.002404 0.941621
 0.053570 0.890455 0.054613 0.001362
 0.001362 0.002404 0.838246 0.157988
 0.680242 0.106822 0.106989 0.105947
 0.105779 0.159198 0.159198 0.575825

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBM22.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBM22/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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