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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.152 C 0.348 G 0.348 T 0.152 

MOTIF 1-CCAAGTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 3.3e-001
 0.001095 0.995301 0.002508 0.001095
 0.001095 0.795486 0.202323 0.001095
 0.993889 0.002508 0.002508 0.001095
 0.822756 0.173641 0.002508 0.001095
 0.001095 0.123687 0.874122 0.001095
 0.001095 0.002508 0.002508 0.993889
 0.101003 0.695095 0.052462 0.151440
 0.001095 0.795325 0.152530 0.051049

MOTIF 2-ATCCCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.992626 0.003026 0.003026 0.001322
 0.001322 0.003026 0.003026 0.992626
 0.001322 0.873585 0.003026 0.122067
 0.122067 0.753034 0.063302 0.061597
 0.061597 0.909103 0.027978 0.001322
 0.001322 0.934055 0.063302 0.001322
 0.871881 0.123771 0.003026 0.001322
 0.001322 0.123771 0.873585 0.001322

MOTIF 3-CGGCCACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 71 P= 7.9e-001
 0.000548 0.997649 0.001255 0.000548
 0.000548 0.300875 0.698029 0.000548
 0.196304 0.001255 0.801894 0.000548
 0.025578 0.889680 0.084195 0.000548
 0.000548 0.729089 0.269815 0.000548
 0.996943 0.001255 0.001255 0.000548
 0.000548 0.997649 0.001255 0.000548
 0.000548 0.695336 0.016410 0.287706

MOTIF 4-GCGAGCCG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 7.9e-001
 0.104136 0.001728 0.893380 0.000755
 0.069936 0.667335 0.178468 0.084260
 0.035178 0.001728 0.962338 0.000755
 0.995789 0.001728 0.001728 0.000755
 0.000755 0.139756 0.858735 0.000755
 0.015005 0.948088 0.001728 0.035178
 0.111375 0.817184 0.001728 0.069713
 0.000755 0.117453 0.823139 0.058653

MOTIF 5-CAGCATCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.001965 0.901940 0.094129 0.001965
 0.629943 0.184046 0.184046 0.001965
 0.001965 0.094129 0.901940 0.001965
 0.091594 0.901940 0.004500 0.001965
 0.989035 0.004500 0.004500 0.001965
 0.001965 0.004500 0.004500 0.989035
 0.001965 0.991569 0.004500 0.001965
 0.181511 0.004500 0.812023 0.001965

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/RBM15.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_RBM15/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	2.38 seconds
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